Browse Element(s) Details


OsAffx.7184.1.S1_at

Description tigr:9639.m02135
TID=OsAffx.7184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24190OsAffx.18983.1.S1_at11/1111+13280060..13280506hypothetical protein
LOC_Os11g24200OsAffx.31105.1.S1_at11/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24200Os.25547.1.S1_at9/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein
LOC_Os11g24240OsAffx.18985.1.S1_at11/1111+13310424..13312114sinapoylglucose:choline sinapoyltransferase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7184.1.S1_at--967--7211Chr11:13286924..13286948 (25 bp)
GTCGAGGTCGGCTGCCGCACGTGCA
LOC_Os11g24210
OsAffx.7184.1.S1_at--1160--3331Chr11:13286911..13286931 (21 bp)
CACGTGCACACGCATACCAAGATAT
LOC_Os11g24210
OsAffx.7184.1.S1_at--313--7351Chr11:13286420..13286928 (25 bp)
GTGCACACGCATACCAAGATATTTG
LOC_Os11g24210
OsAffx.7184.1.S1_at--132--3311Chr11:13286417..13286925 (25 bp)
CACACGCATACCAAGATATTTGCCA
LOC_Os11g24210
OsAffx.7184.1.S1_at--601--6511Chr11:13286403..13286427 (25 bp)
GATATTTGCCATTTATTGGGATGGA
LOC_Os11g24210
OsAffx.7184.1.S1_at--919--5691Chr11:13286373..13286397 (25 bp)
GACTAATTTATCCTTCTTCTACTCA
LOC_Os11g24210
OsAffx.7184.1.S1_at--937--3731Chr11:13286371..13286395 (25 bp)
CTAATTTATCCTTCTTCTACTCATC
LOC_Os11g24210
OsAffx.7184.1.S1_at--430--3131Chr11:13286369..13286393 (25 bp)
AATTTATCCTTCTTCTACTCATCTT
LOC_Os11g24210
OsAffx.7184.1.S1_at--313--10351Chr11:13286367..13286391 (25 bp)
TTTATCCTTCTTCTACTCATCTTTC
LOC_Os11g24210
OsAffx.7184.1.S1_at--467--10551Chr11:13286360..13286384 (25 bp)
TTCTTCTACTCATCTTTCCCCTTTT
LOC_Os11g24210
OsAffx.7184.1.S1_at--565--9311Chr11:13286330..13286354 (25 bp)
TCCCGTCGATCTTGCCAGTGCGTCA
LOC_Os11g24210
Target Sequence 
GTCGAGGTCGGCTGCCGCACGTGCACACGCATACCAAGATATTTGCCATTTATTGGGATGGAAAAAAGACTAATTTATCC
TTCTTCTACTCATCTTTCCCCTTTTCTTCCTCCCGTCGATCTTGCCAGTGCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis