Browse Element(s) Details


OsAffx.31105.1.S1_at

Description tigr:9639.m02134
TID=OsAffx.31105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY143880 At2g22990T20K9.20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2420011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24190OsAffx.18983.1.S1_at11/1111+13280060..13280506hypothetical protein
LOC_Os11g24200OsAffx.31105.1.S1_at11/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24200Os.25547.1.S1_at9/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31105.1.S1_at--960--7631Chr11:13284558..13284582 (25 bp)
GGGAGCCGTATGACGGCATCAGCCT
LOC_Os11g24200
OsAffx.31105.1.S1_at--1129--7491Chr11:13284521..13284545 (25 bp)
GTGGAACCCAAACTCGTGGACCAAG
LOC_Os11g24200
OsAffx.31105.1.S1_at--1060--7511Chr11:13284506..13284530 (25 bp)
GTGGACCAAGGTGGCTAGCATCCTC
LOC_Os11g24200
OsAffx.31105.1.S1_at--90--4771Chr11:13284401..13284425 (25 bp)
GCTGCAGCTCATCGAATTTCTCTAC
LOC_Os11g24200
OsAffx.31105.1.S1_at--956--10311Chr11:13284269..13284409 (25 bp)
TTTCTCTACAAGTGGTTCAGCGCGC
LOC_Os11g24200
OsAffx.31105.1.S1_at--827--1651Chr11:13284251..13284275 (25 bp)
AGCGCGCATGAGGATTACCTTGCAA
LOC_Os11g24200
OsAffx.31105.1.S1_at--38--931Chr11:13284241..13284265 (25 bp)
AGGATTACCTTGCAAACCCATTCTA
LOC_Os11g24200
OsAffx.31105.1.S1_at--350--3271Chr11:13284229..13284253 (25 bp)
CAAACCCATTCTACCTCGGAGGAGG
LOC_Os11g24200
OsAffx.31105.1.S1_at--647--6171Chr11:13284211..13284235 (25 bp)
GAGGAGGTTCATACGCCGCGAAGCT
LOC_Os11g24200
OsAffx.31105.1.S1_at--237--2831Chr11:13283247..13283396 (25 bp)
AAGTTCAACGAATTTCTCACTGAGG
LOC_Os11g24200
OsAffx.31105.1.S1_at--287--8891Chr11:13283150..13283251 (25 bp)
TGAGGACTACTACCCCACACAAAGT
LOC_Os11g24200
Target Sequence 
GGGAGCCGTATGACGGCATCAGCCTGCCGCGGCTGCGGTGGAACCCAAACTCGTGGACCAAGGTGGCTAGCATCCTCTTC
GTGGACTCACCGGTCGGCGCAGGCTTCTCATTCTCCCGTGACCCCAACGGCTACGACGTCGGCGACGTCTCTGCTTCGCT
GCAGCTCATCGAATTTCTCTACAAGTGGTTCAGCGCGCATGAGGATTACCTTGCAAACCCATTCTACCTCGGAGGAGGTT
CATACGCCGCGAAGCTCGTACCATTCATCACCCAGAAGATCTCAGAAGGTATTGAAGCTGGAGTGAGGCCGATTATTAAC
CTCAAGGGCTATACGGTCGGTAATCCCCTTACAGGTGATAGCATTGACTTTGATTCGCGAGTGCCATACTGCCATGGAGT
TGGAGTAATTTCAGATCAGTTGTATAAGACGATAATGGATAACTGCCATGGAAAGGGTTACAGTAACCCCAGGACTTTTA
TTTGTGCAAAAGCTATGTCCAAGTTCAACGAATTTCTCACTGAGGACTACTACCCCACACAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis