Browse Element(s) Details


OsAffx.18985.1.S1_at

Description tigr:9639.m02139
TID=OsAffx.18985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2424011/11sinapoylglucose:choline sinapoyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein
LOC_Os11g24240OsAffx.18985.1.S1_at11/1111+13310424..13312114sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24250NANA11+13313575..13315542Zinc knuckle family protein
LOC_Os11g24260OsAffx.31107.1.S1_at11/1111+13321040..13321606hypothetical protein
LOC_Os11g24270NANA11+13321993..13326513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24280Os.46012.2.S1_x_at2/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.27088.1.A1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.46012.3.S1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24290OsAffx.7186.1.S1_at11/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24290Os.37752.1.S1_at1/1111+13336929..13340956Serine carboxypeptidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18985.1.S1_at--786--2331Chr11:13311733..13311755 (23 bp)
AAAGCTACTAGATGAAGTTTCCAAG
LOC_Os11g24240
OsAffx.18985.1.S1_at--1133--2991Chr11:13311689..13311713 (25 bp)
AATGCATTTATTTGTCTCCGAGGCC
LOC_Os11g24240
OsAffx.18985.1.S1_at--544--10191Chr11:13311681..13311705 (25 bp)
TATTTGTCTCCGAGGCCAAACCTTG
LOC_Os11g24240
OsAffx.18985.1.S1_at--558--4371Chr11:13311666..13311690 (25 bp)
CCAAACCTTGAGTCCATTCACAGAA
LOC_Os11g24240
OsAffx.18985.1.S1_at--1053--10011Chr11:13311622..13311646 (25 bp)
TAGAGTACTAAAGCATCCACCACCA
LOC_Os11g24240
OsAffx.18985.1.S1_at--455--151Chr11:13310676..13310697 (22 bp)
ATTACCTATGCCAACTACTTATCAT
LOC_Os11g24240
OsAffx.18985.1.S1_at--589--3731Chr11:13310662..13310686 (25 bp)
CTACTTATCATACTTTTGGGCAAAC
LOC_Os11g24240
OsAffx.18985.1.S1_at--263--351Chr11:13310633..13310657 (25 bp)
ATAACACCCAAGAAACTCTCGGAAT
LOC_Os11g24240
OsAffx.18985.1.S1_at--1152--5251Chr11:13310484..13310508 (25 bp)
GAATGAATGGGTTAGATGCCACAAC
LOC_Os11g24240
OsAffx.18985.1.S1_at--820--6351Chr11:13310470..13310494 (25 bp)
GATGCCACAACAATGATCTACCATA
LOC_Os11g24240
OsAffx.18985.1.S1_at--470--8831Chr11:13310457..13310481 (25 bp)
TGATCTACCATACACCGAAGACACC
LOC_Os11g24240
Target Sequence 
AAAGCTACTAGATGAAGTTTCCAAGCCCCACATTTTGTACAGGAAATGCATTTATTTGTCTCCGAGGCCAAACCTTGAGT
CCATTCACAGAAAGATCTTGAAAGAGGAGTTTAGAGTACTAAAGCATCCACCACCACGCCCTTCAATACAATGCATTACC
TATGCCAACTACTTATCATACTTTTGGGCAAACAATAATAACACCCAAGAAACTCTCGGAATCAAGAAGGGAAGTGTGAA
TGAATGGGTTAGATGCCACAACAATGATCTACCATACACCGAAGACACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis