Browse Element(s) Details


OsAffx.7186.1.S1_at

Description tigr:9639.m02144
TID=OsAffx.7186.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087352 serine carboxypeptidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2429011/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24240OsAffx.18985.1.S1_at11/1111+13310424..13312114sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24250NANA11+13313575..13315542Zinc knuckle family protein
LOC_Os11g24260OsAffx.31107.1.S1_at11/1111+13321040..13321606hypothetical protein
LOC_Os11g24270NANA11+13321993..13326513retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g24280Os.46012.2.S1_x_at2/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.27088.1.A1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.46012.3.S1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24290OsAffx.7186.1.S1_at11/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24290Os.37752.1.S1_at1/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24300OsAffx.31761.2.S1_at11/1111+13344376..13348496hypothetical protein
LOC_Os11g24300OsAffx.10665.2.S1_at1/1111+13344376..13348496hypothetical protein
LOC_Os11g24310OsAffx.31108.1.S1_at11/1111+13350550..13350876hypothetical protein
LOC_Os11g24320OsAffx.31109.1.S1_at11/1111+13352448..13356167hypothetical protein
LOC_Os11g24330NANA11+13357999..13360105retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24340OsAffx.18987.1.S1_at11/1111+13364180..13368847Serine carboxypeptidase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7186.1.S1_at--235--6411Chr11:13340464..13340484 (21 bp)
GATCGGCCCAATGAAGCTGGTCATC
LOC_Os11g24290
OsAffx.7186.1.S1_at--799--2871Chr11:13340385..13340409 (25 bp)
AAGGTGGCGAACATCCTGTTCGTCG
LOC_Os11g24290
OsAffx.7186.1.S1_at--593--3871Chr11:13340370..13340394 (25 bp)
CTGTTCGTCGACTCGCCGATGGGCG
LOC_Os11g24290
OsAffx.7186.1.S1_at--698--4851Chr11:13340184..13340339 (25 bp)
GCTACGACGTCAGCGAATGGTTCGA
LOC_Os11g24290
OsAffx.7186.1.S1_at--538--9671Chr11:13340175..13340330 (25 bp)
TCAGCGAATGGTTCGATGGCCATCC
LOC_Os11g24290
OsAffx.7186.1.S1_at--1005--8971Chr11:13340150..13340174 (25 bp)
TGAATATCTCGCGAATCCGTTCTAC
LOC_Os11g24290
OsAffx.7186.1.S1_at--361--6711Chr11:13340099..13340123 (25 bp)
GTTCGTCCCGTTCATCACGGAGAAG
LOC_Os11g24290
OsAffx.7186.1.S1_at--1083--5951Chr11:13339962..13340104 (25 bp)
GAGAAGATCTCCGAAGACATTGAAG
LOC_Os11g24290
OsAffx.7186.1.S1_at--298--5331Chr11:13339941..13339965 (25 bp)
GAAGCGGCGGTTAGACCAACTCTTA
LOC_Os11g24290
OsAffx.7186.1.S1_at--400--7871Chr11:13339933..13339957 (25 bp)
GGTTAGACCAACTCTTAATCTGAAG
LOC_Os11g24290
OsAffx.7186.1.S1_at--927--5611Chr11:13337568..13337592 (25 bp)
GACAAGCCCAAGAATCTGATTTGCA
LOC_Os11g24290
Target Sequence 
GATCGGCCCAATGAAGCTGGTCATCGAGCCGTACAACGGCGGCCTGCCGCGGCTGCGTTACCACCCCTACTCGTGGACAA
AGGTGGCGAACATCCTGTTCGTCGACTCGCCGATGGGCGCCGGCTTCTCCTTCTCCCGGGACCCCAACGGCTACGACGTC
AGCGAATGGTTCGATGGCCATCCTGAATATCTCGCGAATCCGTTCTACGTCGGGGGGGACTCCATGGCCGGGAGGTTCGT
CCCGTTCATCACGGAGAAGATCTCCGAAGACATTGAAGCGGCGGTTAGACCAACTCTTAATCTGAAGATGATATTGGAGC
ACTGCAAAGGGGAGGACTACGACAAGCCCAAGAATCTGATTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis