Browse Element(s) Details


OsAffx.31109.1.S1_at

Description tigr:9639.m02147
TID=OsAffx.31109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serine carboxypeptidase I, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2432011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24280Os.46012.2.S1_x_at2/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.27088.1.A1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24280Os.46012.3.S1_x_at1/1111+13331295..13333891retrotransposon protein, putative, unclassified
LOC_Os11g24290OsAffx.7186.1.S1_at11/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24290Os.37752.1.S1_at1/1111+13336929..13340956Serine carboxypeptidase family protein
LOC_Os11g24300OsAffx.31761.2.S1_at11/1111+13344376..13348496hypothetical protein
LOC_Os11g24300OsAffx.10665.2.S1_at1/1111+13344376..13348496hypothetical protein
LOC_Os11g24310OsAffx.31108.1.S1_at11/1111+13350550..13350876hypothetical protein
LOC_Os11g24320OsAffx.31109.1.S1_at11/1111+13352448..13356167hypothetical protein
LOC_Os11g24330NANA11+13357999..13360105retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24340OsAffx.18987.1.S1_at11/1111+13364180..13368847Serine carboxypeptidase family protein, expressed
LOC_Os11g24350OsAffx.7149.1.S1_at1/1111+13371643..13379209retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31109.1.S1_at--642--3611Chr11:13356109..13356133 (25 bp)
CTTGGACCTGGCGTTCGATGGATGA
LOC_Os11g24320
OsAffx.31109.1.S1_at--47--7391Chr11:13355174..13355198 (25 bp)
GTGACCATGATACCGTTTTGCCATT
LOC_Os11g24320
OsAffx.31109.1.S1_at--278--9971Chr11:13355164..13355188 (25 bp)
TACCGTTTTGCCATTTCTTGGTACA
LOC_Os11g24320
OsAffx.31109.1.S1_at--506--2371Chr11:13355138..13355162 (25 bp)
AAACCTGGGTGAGGTCACTCAACTA
LOC_Os11g24320
OsAffx.31109.1.S1_at--429--7831Chr11:13355126..13355150 (25 bp)
GGTCACTCAACTATCCCATTGTAGA
LOC_Os11g24320
OsAffx.31109.1.S1_at--760--9291Chr11:13354943..13355094 (25 bp)
TCCGCAGGATTCACCGTAGCATATG
LOC_Os11g24320
OsAffx.31109.1.S1_at--650--6571Chr11:13353592..13353616 (25 bp)
GATTCTCTTAAGATAGCACTTGGAT
LOC_Os11g24320
OsAffx.31109.1.S1_at--176--5111Chr11:13353577..13353601 (25 bp)
GCACTTGGATATGTCACTTTGAGCA
LOC_Os11g24320
OsAffx.31109.1.S1_at--796--3191Chr11:13352510..13352532 (23 bp)
CAAGATTCAACTGACCTCGGGTGGA
LOC_Os11g24320
OsAffx.31109.1.S1_at--1119--7711Chr11:13352492..13352516 (25 bp)
GGGTGGACCATCACGGCAAAGCCTT
LOC_Os11g24320
OsAffx.31109.1.S1_at--1109--8231Chr11:13352478..13352502 (25 bp)
GGCAAAGCCTTCAATCATCCTTATG
LOC_Os11g24320
Target Sequence 
CTTGGACCTGGCGTTCGATGGATGAGGTGACACCGGGTTCGATGGGGAAGGAGGAGACGCTGGCCCCGGGAGGGAGCTCG
GGGGAGGACGCCGCTGCATCCTCTATTCCTCTCGGTGACCATGATACCGTTTTGCCATTTCTTGGTACACAAACCTGGGT
GAGGTCACTCAACTATCCCATTGTAGATGACTGGAGAGCTTGGCATGTGGATGGCCAGTCCGCAGGATTCACCGTAGCAT
ATGGAAACAACCTGACATTTGCTACTGTTAAGGTAACACAACTAAAACCACACAAAGTAGATGTTAAAACTGTTGATTCT
CTTAAGATAGCACTTGGATATGTCACTTTGAGCACCGTCAATAATCAAGATTCAACTGACCTCGGGTGGACCATCACGGC
AAAGCCTTCAATCATCCTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis