Browse Element(s) Details


Os.25559.1.S1_at

Description gb:AK069867.1
DB_XREF= gi:32979891
TID=Os.25559.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038F14, full insert sequence.
FL= gb:AK069867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1032011/11uncharacterized plant-specific domain TIGR01627 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10270OsAffx.31678.2.S1_at11/1112+5431561..5433649hAT family dimerisation domain containing protein
LOC_Os12g10280OsAffx.7548.1.S1_at11/1112+5434714..5438021Major intrinsic protein, expressed
LOC_Os12g10290NANA12+5439409..5439792hypothetical protein
LOC_Os12g10300NANA12+5441629..5441876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10310OsAffx.10633.1.S1_at3/1112+5442275..5446785retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10320Os.25559.1.S1_at11/1112+5454291..5455810uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os12g10330Os.54234.1.S1_at11/1112+5468030..5470355NB-ARC domain containing protein, expressed
LOC_Os12g10340Os.54200.1.S1_at11/1112+5474213..5476323NB-ARC domain containing protein, expressed
LOC_Os12g10340OsAffx.31684.1.S1_at1/1112+5474213..5476323NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25559.1.S1_at--1065--4312Chr02:10885905..10886173 (25 bp)
CCTTGATGAGAGATGAGCTTCGCCT
NONE
Os.25559.1.S1_at--907--8131Chr12:5454743..5454767 (25 bp)
GGACACCGTGATGACACCATTGCCA
LOC_Os12g10320
Os.25559.1.S1_at--778--7391Chr12:5454736..5454760 (25 bp)
GTGATGACACCATTGCCATCGTCGT
LOC_Os12g10320
Os.25559.1.S1_at--956--3551Chr12:5454696..5454720 (25 bp)
CATCTTCTTCTTCACATATGACACC
LOC_Os12g10320
Os.25559.1.S1_at--911--10512Chr10:18260045..18260545 (25 bp)
TTCACATATGACACCACCATTGCTG
NONE
Os.25559.1.S1_at--306--511Chr12:5454656..5454680 (25 bp)
ATCGTCTTCTTGAATTCACATGTCT
LOC_Os12g10320
Os.25559.1.S1_at--713--2111Chr12:5454639..5454663 (25 bp)
ACATGTCTTTTGTGATGATCAAGGA
LOC_Os12g10320
Os.25559.1.S1_at--216--6311Chr12:5454604..5454628 (25 bp)
GATGAGTGCACCTTTGGGATCATGC
LOC_Os12g10320
Os.25559.1.S1_at--549--6391Chr12:5454521..5454545 (25 bp)
GATCGGACCGTGGAGATATTGTTAT
LOC_Os12g10320
Os.25559.1.S1_at--5--7511Chr12:5454321..5454345 (25 bp)
GTGGTGCCATTTGAGATTCCTATCT
LOC_Os12g10320
Os.25559.1.S1_at--528--6051Chr12:5454309..5454333 (25 bp)
GAGATTCCTATCTACTGAAGCAATA
LOC_Os12g10320
Target Sequence 
CCTTGATGAGAGATGAGCTTCGCCTTCGCCTTCGCCGCGCACATGGACACCGTGATGACACCATTGCCATCGTCGTCTTC
TTCATCTTCTTCATCTTCTTCTTCACATATGACACCACCATTGCTGCCGTCATCGTCTTCTTGAATTCACATGTCTTTTG
TGATGATCAAGGATAAGTAGGATGATGAGTGCACCTTTGGGATCATGCACCAATGGAGGCGGTGGCGCGATGCGTGTGAG
CCGTCGGATCGAGAACGGACGGTTCGGATCGGACCGTGGAGATATTGTTATTATATATAGTTTCTTTTTTTTTTCAAATG
CAGCTTTTTCTTTGTTGTTTTTTTTATGGACGGTGGGTGAGATGGATATGCAGGCGAATTATAATTCTTGGCTATTTTTC
ATAGATTATCGNTTGTGTTTCTTTTTAATTCATAATTGAGATATCATCTTCNGTGGGTGACTGATGAGTGGTGCCATTTG
AGATTCCTATCTACTGAAGCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis