Browse Element(s) Details


Os.25560.1.S1_at

Description gb:AK100979.1
DB_XREF= gi:32986188
TID=Os.25560.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023144I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023144I23, full insert sequence.
FL= gb:AK100979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4305011/11kinesin heavy chain, putative, expressed
LOC_Os02g4313011/11kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43010Os.15696.1.S1_a_at11/112+25884576..25895049Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os02g43020Os.13461.1.S1_at11/112+25889630..25894023stress-inducible protein, putative, expressed
LOC_Os02g43030Os.5182.1.S1_at10/112+25904073..25905040Integral membrane protein, expressed
LOC_Os02g43040Os.5427.1.S1_at11/112+25907063..25911006expressed protein
LOC_Os02g43050Os.25560.1.S1_at11/112+25916471..25921581kinesin heavy chain, putative, expressed
LOC_Os02g43060NANA2+25925642..25928035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g43070OsAffx.30921.1.S1_s_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.1.S1_x_at11/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.30921.2.S1_at3/112+25931303..25932544hypothetical protein
LOC_Os02g43070OsAffx.24253.1.S1_x_at1/112+25931303..25932544hypothetical protein
LOC_Os02g43080NANA2+25934472..25938241salt-inducible protein, putative
LOC_Os02g43090Os.10557.1.S1_at11/112+25940594..25949456Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25560.1.S1_at--841--1672Chr02:25967082..25967106 (25 bp)
AGCCAGGCCAAGTTCTCAAGGAGAT
LOC_Os02g43130
Os.25560.1.S1_at--321--6712Chr02:25966979..25967003 (25 bp)
GTTCGCCTGATTTGGATCGACCACA
LOC_Os02g43130
Os.25560.1.S1_at--988--6332Chr02:25966932..25966956 (25 bp)
GATGCGACTGACCAAAGGATCTTTT
LOC_Os02g43130
Os.25560.1.S1_at--634--4312Chr02:25966883..25966907 (25 bp)
CCTTTTCGATCTTGGTGTATCTGCA
LOC_Os02g43130
Os.25560.1.S1_at--145--6912Chr02:25966867..25966891 (25 bp)
GTATCTGCATGTTCTGATTGTCCAT
LOC_Os02g43130
Os.25560.1.S1_at--403--2432Chr02:25966825..25966849 (25 bp)
AAAATTGATGGTGGCGTCCGTTTGC
LOC_Os02g43130
Os.25560.1.S1_at--134--4492Chr02:25966756..25966780 (25 bp)
GCCGGTCTTTGATTGCTGCTGACAT
LOC_Os02g43130
Os.25560.1.S1_at--915--10412Chr02:25966732..25966756 (25 bp)
TTATATCGCCGCAGAGCCAATCGGT
LOC_Os02g43130
Os.25560.1.S1_at--832--3992Chr02:25966693..25966717 (25 bp)
CGTGTGCTAGTTTCTCGTATTTTGC
LOC_Os02g43130
Os.25560.1.S1_at--972--6872Chr02:25966677..25966701 (25 bp)
GTATTTTGCTTGTAGATCCGCTTGA
LOC_Os02g43130
Os.25560.1.S1_at--936--6372Chr02:25966663..25966687 (25 bp)
GATCCGCTTGATATAACTGTGCTTA
LOC_Os02g43130
Target Sequence 
AGCCAGGCCAAGTTCTCAAGGAGATGTTCGGGCTCAGCTTCGCGCCGCAGCAGCAGCCGACCCGGCGGCGATCCTCCAAC
GGCTGGAGATACGGGATCCCTTCGTTCGCCTGATTTGGATCGACCACACACGAAACAAGGCTGACACGACGATGCGACTG
ACCAAAGGATCTTTTGTTTTTTCTCCTTTTNTTTTTTCNCCTTTTCGATCTTGGTGTATCTGCATGTTCTGATTGTCCAT
AGGATTTTAGGAAGCACAAAATTGATGGTGGCGTCCGTTTGCGCCCTTTGTGTTGCCGGCCTCGTGCATGTTTCTGCCCA
GCCGCCGCCGGTCTTTGATTGCTGCTGACATTATATCGCCGCAGAGCCAATCGGTGTTGTGTTGTATAACGTGTGCTAGT
TTCTCGTATTTTGCTTGTAGATCCGCTTGATATAACTGTGCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis