Browse Element(s) Details


Os.25562.1.S1_at

Description gb:AK058980.1
DB_XREF= gi:32968998
TID=Os.25562.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D11, full insert sequence.
FL= gb:AK058980.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4827011/11auxin-responsive protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed
LOC_Os05g48270Os.25562.1.S1_at11/115+27583058..27586077auxin-responsive protein, putative, expressed
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25562.1.S1_at--133--8051Chr05:27585398..27585422 (25 bp)
GGAGTTGCCCTCTACAACAAGATCC
LOC_Os05g48270
Os.25562.1.S1_at--454--9451Chr05:27585471..27585614 (25 bp)
TCGGCATCCTTCAGATTTTGGCGTT
LOC_Os05g48270
Os.25562.1.S1_at--475--10411Chr05:27585605..27585629 (25 bp)
TTTTGGCGTTCTTCCTGCGGCCGAA
LOC_Os05g48270
Os.25562.1.S1_at--532--3311Chr05:27585630..27585654 (25 bp)
CACGGACTCCAAGTACCGGAAGTAT
LOC_Os05g48270
Os.25562.1.S1_at--268--9991Chr05:27585664..27585688 (25 bp)
TACCACCACTGGTCGGGCAGGCTGG
LOC_Os05g48270
Os.25562.1.S1_at--450--7131Chr05:27585796..27585820 (25 bp)
GTCATCGGGCTGGAGTTCATGCTGC
LOC_Os05g48270
Os.25562.1.S1_at--1121--8591Chr05:27585829..27585853 (25 bp)
TGGTCCAAGGAAAGCGAGCCCACGC
LOC_Os05g48270
Os.25562.1.S1_at--259--8931Chr05:27585890..27585914 (25 bp)
TGCCGCGAACCCACTATTTTTTGGT
LOC_Os05g48270
Os.25562.1.S1_at--757--5731Chr05:27585940..27585964 (25 bp)
GACTGTGTCTTAGCTCTGGTGGTGT
LOC_Os05g48270
Os.25562.1.S1_at--1019--4731Chr05:27585989..27586013 (25 bp)
GCTGTTCGATTTTCTGCATGTTGCT
LOC_Os05g48270
Os.25562.1.S1_at--102--7771Chr05:27586050..27586074 (25 bp)
GGTGCAATTGCACTATGCCACAATT
LOC_Os05g48270
Target Sequence 
GGAGTTGCCCTCTACAACAAGATCCAGGCCGACATCCCGGCGCACAGGGGCCTCGGCATCTTCATCCTCGTCCTCGGCAT
CCTTCAGATTTTGGCGTTCTTCCTGCGGCCGAACACGGACTCCAAGTACCGGAAGTATTGGAACTGGTACCACCACTGGT
CGGGCAGGCTGGTGCTGTTCTTCGCCGCCGTCAANATCGTGCTCGGTATCCACGTCGGCGGCGGGGACAACTCGTGGAAG
ATCGGGTACGGCTTCAACCTCGCCATCATCCTCCTCGCCGTCATCGGGCTGGAGTTCATGCTGCGGACGAGGTGGTCCAA
GGAAAGCGAGCCCACGCCGACGTACTAGGCGCGGCGCCGGCGGCCGCCGTNGATGCCGCGAACCCACTATTTTTTGGTTT
TTTTNNNGTGCCCTTGGGCGCTGGACTGTGTCTTAGCTCTGGTGGTGTTGTGATTGTTTTTTGGCCTTCTGTGCTGTTCG
ATTTTCTGCATGTTGCTGTCAAGTGAAACTGTGAAAAAGTGTAAGCGTGAGCAGGTGCAATTGCACTATGCCACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis