Browse Element(s) Details


Os.25634.1.S1_at

Description gb:AK071252.1
DB_XREF= gi:32981275
TID=Os.25634.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25634 (NCBI UniGene Cluster)
UG_TITLE=Plasma membrane proton-ATPase gene OSA3 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088D22, full insert sequence.
FL= gb:AK071252.1 gb:AK067535.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4415011/11Plasma membrane ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44120NANA12+27338046..27338948transposon protein, putative, unclassified
LOC_Os12g44130Os.53455.1.S1_at11/1112+27341184..27343840expressed protein
LOC_Os12g44140Os.7063.1.S1_at11/1112+27345228..27348862expressed protein
LOC_Os12g44150Os.25634.1.S1_at11/1112+27353613..27360162Plasma membrane ATPase 1, putative, expressed
LOC_Os12g44160OsAffx.32184.1.S1_at11/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44160Os.39543.1.A1_at2/1112+27360807..27364795HI0933-like protein, expressed
LOC_Os12g44170Os.15760.2.S1_at10/1112+27364979..27369511pentatricopeptide, putative, expressed
LOC_Os12g44174Os.15760.1.S1_at11/1112+27369225..27369816expressed protein
LOC_Os12g44180Os.14785.1.S1_at11/1112+27373774..27377633expressed protein
LOC_Os12g44190Os.50620.1.S1_at11/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44190OsAffx.25760.1.S1_x_at1/1112+27378707..27380715ATPase 3, putative, expressed
LOC_Os12g44200NANA12+27384508..27388587retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25634.1.S1_at--1098--8791Chr12:27359335..27359359 (25 bp)
TGTTCTCGGAGAAGGCTGGCTACAA
LOC_Os12g44150
Os.25634.1.S1_at--1005--71Chr12:27359403..27359665 (25 bp)
ATTGCCAGGCTTAGGGAGCTCCATA
LOC_Os12g44150
Os.25634.1.S1_at--811--7351Chr12:27359692..27359716 (25 bp)
GTGAAGCTCAAAGGCCTCGACATTG
LOC_Os12g44150
Os.25634.1.S1_at--370--891Chr12:27359703..27359727 (25 bp)
AGGCCTCGACATTGAGACCATCCAG
LOC_Os12g44150
Os.25634.1.S1_at--1140--1511Chr12:27359726..27359750 (25 bp)
AGCAGTCTTACACCGTGTGATCCAG
LOC_Os12g44150
Os.25634.1.S1_at--1041--7451Chr12:27359740..27359764 (25 bp)
GTGTGATCCAGCCTGTCCATAAAGA
LOC_Os12g44150
Os.25634.1.S1_at--613--10391Chr12:27359786..27359810 (25 bp)
TTTTCCAGATTTTCCTGTTTCGCTT
LOC_Os12g44150
Os.25634.1.S1_at--912--3871Chr12:27359800..27359824 (25 bp)
CTGTTTCGCTTTAACTTGACTGCAA
LOC_Os12g44150
Os.25634.1.S1_at--479--4091Chr12:27359853..27359877 (25 bp)
CGAATTGCTGTAATCTTTGTCCCTC
LOC_Os12g44150
Os.25634.1.S1_at--848--8251Chr12:27360068..27360092 (25 bp)
GGCAGCTGGCAGTATGTAACATGTG
LOC_Os12g44150
Os.25634.1.S1_at--663--7431Chr12:27360090..27360114 (25 bp)
GTGGGCTTCAATGTATCCAACCAAG
LOC_Os12g44150
Target Sequence 
TGTTCTCGGAGAAGGCTGGCTACAATGAGCTCAATCAGATGGCTGAAGAGGCGAAGAGGAGGGCGGAGATTGCCAGGCTT
AGGGAGCTCCATACGCTCAAGGGGCATGTAGAATCGGTTGTGAAGCTCAAAGGCCTCGACATTGAGACCATCCAGCAGTC
TTACACCGTGTGATCCAGCCTGTCCATAAAGAAAGNAAAAAGAGGATTATTTTTTTTCCAGATTTTCCTGTTTCGCTTTA
ACTTGACTGCAATNCTGCAATCACCTACGTGTNCTTGAACCGAATTGCTGTAATCTTTGTCCCTCCTGCTCCANCTTTCT
ACTACATGGTAGTGTTATATAATTTTTGGTCACCTGAAAATATATAAGTGTTTGAGGTGAAGCACAATGGCAATGCCAGA
GTTTTTTTGCTCGGTTACTGAGAAGCATGTTTTCATAATCAATCGGTCAATTGTATGGACATATTATAGATGAATTTGGT
AACTGTTTGTGTGGGGGCAGCTGGCAGTATGTAACATGTGGGCTTCAATGTATCCAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25634.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis