Browse Element(s) Details


Os.25870.2.S1_a_at

Description gb:CA766621
DB_XREF= gi:27548628
DB_XREF=AF53-Rpf_12_C16_T7_058.ab1
CLONE=C0004288
TID=Os.25870.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25870 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_176877.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1287010/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed
LOC_Os02g12900Os.57132.1.S1_at11/112+6810648..6814112Cysteine synthase, putative, expressed
LOC_Os02g12910NANA2+6815291..6818362Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25870.2.S1_a_at--539--10751Chr02:6792695..6792719 (25 bp)
TTGAGGGCATGCAGGTCCATCCTAA
LOC_Os02g12870
Os.25870.2.S1_a_at--877--4311Chr02:6792711..6792735 (25 bp)
CCATCCTAATGAGGGCGGTGTTACT
LOC_Os02g12870
Os.25870.2.S1_a_at--193--5291Chr02:6793184..6793208 (25 bp)
GAATGGTCTTCATACTGGCTTCCAC
LOC_Os02g12870
Os.25870.2.S1_a_at--1130--3731Chr02:6793216..6793240 (25 bp)
CTCACTACTAGAATTGCAGCGGGTT
LOC_Os02g12870
Os.25870.2.S1_a_at--544--4671Chr02:6793234..6793258 (25 bp)
GCGGGTTGCTTCATTCTTGCATTAA
LOC_Os02g12870
Os.25870.2.S1_a_at--1101--9751Chr02:6793256..6793280 (25 bp)
TAATCGTTGTTCTTTTTGTTGCTAA
LOC_Os02g12870
Os.25870.2.S1_a_at--758--3711Chr02:6793277..6793407 (25 bp)
CTAAAAATTGGTTTCTTCGCTGGCT
LOC_Os02g12870
Os.25870.2.S1_a_at--442--31Chr02:6793489..6793510 (22 bp)
ATTGGTTTCATCGTATTCCTTGCTG
LOC_Os02g12870
Os.25870.2.S1_a_at--108--9251Chr02:6793502..6793526 (25 bp)
TCCTTGCTGTTGTTTGGGTCATTCA
LOC_Os02g12870
Os.25870.2.S1_a_at--631--5231NONE
GAATAGCTTGTTTTCAGTCTACGAT
NONE
Os.25870.2.S1_a_at--710--4032Chr03:9557772..9557795 (24 bp)
CGTTTATCTTTCTTTGCGCATCAAT
NONE
Target Sequence 
TTGAGGGCATGCAGGTCCATCCTAATGAGGGCGGTGTTACTCAAACTCGGGGCGGCATATATTGGATANTCTTGCCTGCT
GGATATCTGGGTTCATCATTTTGGGGAATGGTCTTCATACTGGCTTCCACAAATCTCCTCACTACTAGAATTGCAGCGGG
TTGCTTCATTCTTGCATTAATCGTTGTTCTTTTTGTTGCTAAAAATTGGTTTCTTCGCTGGCTNTGCATTGGTTTCATCG
TATTCCTTGCTGTTGTTTGGGTCATTCAAGAATTCACAAAATTCCATAGTCTCAAGTATGTAATTTTATTCATAGGTGTG
ATGAATAGCTTGTTTTCAGTCTACGATATCTATGATGACTTGATATCACGAAGAGTTCATTTCAAGTGATGCTGAGAAAT
TTGCTGAAATCTGCCATGTCCTTGCAATGGTTGTGCATGGGGTGTCATATGGGGCTTCATCTCGTTTATCTTTCTTTGCG
CATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25870.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis