Browse Element(s) Details


Os.26063.1.S1_at

Description gb:AB053296.1
DB_XREF= gi:12082338
TID=Os.26063.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, expressed under carbonate stress
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, expressed under carbonate stress.
FL= gb:AB053296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g331102/11hypothetical protein
LOC_Os12g133501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein
LOC_Os04g33110Os.26063.1.S1_at2/114+19858879..19861827hypothetical protein
LOC_Os04g33120OsAffx.20100.2.S1_at10/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.2.S1_x_at9/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.1.S1_x_at6/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33120OsAffx.20100.3.S1_x_at3/114+19862358..19866121retrotransposon protein, putative, unclassified
LOC_Os04g33130NANA4+19870193..19870909hypothetical protein
LOC_Os04g33140OsAffx.14105.1.S1_at11/114+19874544..19876831hypothetical protein
LOC_Os04g33150Os.46073.1.A1_at11/114+19877802..19879256Desiccation-related protein PCC13-62 precursor, putative, expressed
LOC_Os04g33160OsAffx.26301.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33160OsAffx.14433.1.S1_at1/114+19880418..19880816hypothetical protein
LOC_Os04g33170OsAffx.26302.1.S1_at11/114+19885521..19885904hypothetical protein
LOC_Os04g33180OsAffx.14106.1.S1_at3/114+19886819..19887061hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26063.1.S1_at--340--7215Chr01:24333335..24333359 (25 bp)
GTCGATCTGCTCTCAGGCGTTGCCT
NONE
Os.26063.1.S1_at--835--899Chr01:24333349..24333373 (25 bp)
AGGCGTTGCCTGTGGTGTTTTTATC
NONE
Os.26063.1.S1_at--445--7691Chr11:8859135..8859159 (25 bp)
GGGTATATGTATTGAAAGCTGTTCT
NONE
Os.26063.1.S1_at--178--1334Chr12:1335445..1335469 (25 bp)
AGAGGCAGGCTAAACTGATGGCGAA
NONE
Os.26063.1.S1_at--685--5555Chr12:26716910..26716934 (25 bp)
GAAACCTGTGTTTTGATGCTTGAAA
NONE
Os.26063.1.S1_at--90--3031NONE
AATGCCAATATTTTAAGTCCTGTAA
NONE
Os.26063.1.S1_at--162--9752Chr12:26716947..26716969 (23 bp)
TAAGTCCTGTAATAACTGTTTGTTT
NONE
Os.26063.1.S1_at--1138--10371Chr11:8858867..8858891 (25 bp)
TTTTCTCGTCTTATCTGTAAGAACT
NONE
Os.26063.1.S1_at--590--5471Chr11:8858847..8858871 (25 bp)
GAACTAGATGTTCTGGAACTCTTGT
NONE
Os.26063.1.S1_at--850--8174Chr12:26717009..26717033 (25 bp)
GGAACTCTTGTAATCATCTGCGTTT
NONE
Os.26063.1.S1_at--760--7071Chr11:8858824..8858848 (25 bp)
GTAATCATCTGCGTTTTATTTAATG
NONE
Target Sequence 
GTCGATCTGCTCTCAGGCGTTGCCTGTGGTGTTTTTATCCTATTTTGTGTTNGGGTCTTTTGTTTGTAGGGAGTGTGTTT
GGCCTGTCGGCCCCTAAAACCTGTCTTAGTTATCTTTTATGTAATAATTTCTGTAAAAANTTGGGTATATGTATTGAAAG
CTGTTCTGNATATCAATCTGTGNGCGATNGAAATCCNNNNCNNNNNNNNGTGGTTTNGGGATACCATACTCAAACCGGGT
ATCCCNCACAATNTTTCACTCAAAATTTGGANGGAGGGGCGGCAGNCAAAGAATAGGATGGGAAACAGAGGCAGGCTAAA
CTGATGGCGAAGAGTTTGAAGACGGCGATGGAAACCTGTGTTTTGATGCTTGAAATGCCAATATTTTAAGTCCTGTAATA
ACTGTTTGTTTTCCTTTTTTTTCTCGTCTTATCTGTAAGAACTAGATGTTCTGGAACTCTTGTAATCATCTGCGTTTTAT
TTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis