Browse Element(s) Details


Os.26261.1.S1_at

Description gb:AK072910.1
DB_XREF= gi:32982933
TID=Os.26261.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0698A10.25 (P0698A10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148N24, full insert sequence.
FL= gb:AK121648.1 gb:AK065101.1 gb:AK100486.1 gb:AK072910.1 gb:AK073144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6552011/11membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65470OsAffx.31174.5.S1_x_at11/111+38332742..38333489hypothetical protein
LOC_Os01g65470OsAffx.31174.4.S1_x_at5/111+38332742..38333489hypothetical protein
LOC_Os01g65480Os.8452.1.S1_at11/111+38336490..38339127DnaJ domain containing protein, expressed
LOC_Os01g65490Os.32122.1.S1_x_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.1.S1_at11/111+38339648..38341148expressed protein
LOC_Os01g65490Os.32122.2.S1_at1/111+38339648..38341148expressed protein
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26261.1.S1_at--12--2011Chr01:38354085..38354109 (25 bp)
ACTCGTCGGCGATCTCAGTTTGGAG
LOC_Os01g65520
Os.26261.1.S1_at--111--2311Chr01:38354048..38354072 (25 bp)
AAAGGCTGTGGTACCCAGGTCATTT
LOC_Os01g65520
Os.26261.1.S1_at--813--4991Chr01:38353979..38354003 (25 bp)
GCATGGTCCTCTCCAGTGGAATGTA
LOC_Os01g65520
Os.26261.1.S1_at--698--9231Chr01:38353874..38353898 (25 bp)
TCCATGTGCTTCCTTGTATATTCCA
LOC_Os01g65520
Os.26261.1.S1_at--114--10171Chr01:38353829..38353853 (25 bp)
TATCTTGGCATGATCGCTGTGCACT
LOC_Os01g65520
Os.26261.1.S1_at--348--4731Chr01:38353814..38353838 (25 bp)
GCTGTGCACTCGATGTTCTTAATCT
LOC_Os01g65520
Os.26261.1.S1_at--537--6731Chr01:38353800..38353824 (25 bp)
GTTCTTAATCTGAGTGGCCTTCCTG
LOC_Os01g65520
Os.26261.1.S1_at--29--6671Chr01:38353749..38353773 (25 bp)
GTTGCTTTACAAGGCAGTACTCCGT
LOC_Os01g65520
Os.26261.1.S1_at--402--10691Chr01:38353720..38353744 (25 bp)
TTCCAGCTTGAGAGGCCGCATTGAT
LOC_Os01g65520
Os.26261.1.S1_at--585--8811Chr01:38353593..38353617 (25 bp)
TGTTGGTTGCTTCCAGTTCCAGATC
LOC_Os01g65520
Os.26261.1.S1_at--455--6691Chr01:38353578..38353602 (25 bp)
GTTCCAGATCTCTTGATAGCCATTT
LOC_Os01g65520
Target Sequence 
ACTCGTCGGCGATCTCAGTTTGGAGGGTAGAAAAGGAAAAGGCTGTGGTACCCAGGTCATTTTTAAGTTGCAGCAAGCTA
CCAGTGCTAGATTATTTTTGTCAGCTGCATGGTCCTCTCCAGTGGAATGTAGAAGCAAATCTACCTGGAAAGCATGTGCA
TGCACCTGGAGCCAGGCAATTTCTTTTATAAGTTCAGAACCATGACAGGCCTCCATGTGCTTCCTTGTATATTCCAAGAA
GAGATGGAGTAATATATATCTTGGCATGATCGCTGTGCACTCGATGTTCTTAATCTGAGTGGCCTTCCTGCCTGGTGCAC
ATGGCCTCAACATCATGTTGCTTTACAAGGCAGTACTCCGTTTGCTTCCAGCTTGAGAGGCCGCATTGATAACTGCTAAC
GGTACTGAATGAAGTCAATGACCTCAAACATGTACTACAAATGTACAGCTCTTTTAGTTGAAACAGTACTTTGCACTGGT
TTGCTGTAAATTTGTTGGTTGCTTCCAGTTCCAGATCTCTTGATAGCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis