Browse Element(s) Details


OsAffx.23926.2.S1_at

Description tigr:9629.m06500
TID=OsAffx.23926.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g655407/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65500NANA1+38344981..38348540Chloride channel protein CLC-c, putative
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23926.2.S1_at--275--7331Chr01:38368955..38369389 (25 bp)
GTGCAGATCTCGAGGGAAATCAGGA
LOC_Os01g65540
OsAffx.23926.2.S1_at--679--6411Chr01:38368950..38369384 (25 bp)
GATCTCGAGGGAAATCAGGATCTAA
LOC_Os01g65540
OsAffx.23926.2.S1_at--850--7371NONE
GTGACGATCCTGGAGACGACAGCAG
NONE
OsAffx.23926.2.S1_at--776--5771NONE
GACGATCCTGGAGACGACAGCAGCT
NONE
OsAffx.23926.2.S1_at--811--6371NONE
GATCCTGGAGACGACAGCAGCTGGA
NONE
OsAffx.23926.2.S1_at--393--9271NONE
TCCTGGAGACGACAGCAGCTGGAAT
NONE
OsAffx.23926.2.S1_at--808--5991Chr01:38367805..38367828 (24 bp)
GAGACGACAGCAGCTGGAATCTACA
LOC_Os01g65540
OsAffx.23926.2.S1_at--388--5651Chr01:38367800..38367824 (25 bp)
GACAGCAGCTGGAATCTACAGCCAT
LOC_Os01g65540
OsAffx.23926.2.S1_at--624--5071Chr01:38367796..38367820 (25 bp)
GCAGCTGGAATCTACAGCCATGCAA
LOC_Os01g65540
OsAffx.23926.2.S1_at--348--5251Chr01:38367789..38367813 (25 bp)
GAATCTACAGCCATGCAAAGCACAT
LOC_Os01g65540
OsAffx.23926.2.S1_at--255--9531Chr01:38367786..38367810 (25 bp)
TCTACAGCCATGCAAAGCACATGGA
LOC_Os01g65540
Target Sequence 
GTGCAGATCTCGAGGGAAATCAGGATCTAAGTACATGGTCAAAATGGGACTACGTACCGTACCGTACCGTCAACGTGACG
ATCCTGGAGACGACAGCAGCTGGAATCTACAGCCATGCAAAGCACATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23926.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis