Browse Element(s) Details


Os.33977.1.S1_at

Description gb:AK073302.1
DB_XREF= gi:32983325
TID=Os.33977.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.4 (P0471B04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028G02, full insert sequence.
FL= gb:AK073302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6558011/11Mitotic checkpoint protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007093biological_processmitotic checkpoint
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0042646cellular_componentplastid nucleoid
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33977.1.S1_at--140--6091Chr01:38398042..38398066 (25 bp)
GAGTATGCTTTCTTCGAGTCACCGA
LOC_Os01g65580
Os.33977.1.S1_at--369--3591Chr01:38398085..38398109 (25 bp)
CATTTTGGAAACACTCTGGGCTCAT
LOC_Os01g65580
Os.33977.1.S1_at--950--8311Chr01:38398103..38398127 (25 bp)
GGCTCATGTCTTTCCGATGCATTAT
LOC_Os01g65580
Os.33977.1.S1_at--1014--10151Chr01:38398125..38398149 (25 bp)
TATCACAGCTTCTCGTAGTAACTGG
LOC_Os01g65580
Os.33977.1.S1_at--608--3171Chr01:38398159..38398183 (25 bp)
AATTGTTATGTTGTGGCAGCCCTGG
LOC_Os01g65580
Os.33977.1.S1_at--1156--1771Chr01:38398184..38398208 (25 bp)
ACCGTGGTCGAGCAAGCTCCTAGAT
LOC_Os01g65580
Os.33977.1.S1_at--136--5951Chr01:38398314..38398338 (25 bp)
GAGCACGGCGTGTTACTAATTGGAC
LOC_Os01g65580
Os.33977.1.S1_at--604--10771Chr01:38398351..38398375 (25 bp)
TTGATGCCGGGCTGTCACATACTCA
LOC_Os01g65580
Os.33977.1.S1_at--237--331Chr01:38398369..38398393 (25 bp)
ATACTCACATGGATTCACCTCTGTT
LOC_Os01g65580
Os.33977.1.S1_at--1036--1631Chr01:38398424..38398448 (25 bp)
AGCGTTACTTGTACTGTGGCCTGGA
LOC_Os01g65580
Os.33977.1.S1_at--238--7551Chr01:38398439..38398463 (25 bp)
GTGGCCTGGACTGAAGCATGAGCTT
LOC_Os01g65580
Target Sequence 
GAGTATGCTTTCTTCGAGTCACCGAAGATTGGAAAATGTATTTCATTTTGGAAACACTCTGGGCTCATGTCTTTCCGATG
CATTATCACAGCTTCTCGTAGTAACTGGAGATGTCCAAATTGTTATGTTGTGGCAGCCCTGGACCGTGGTCGAGCAAGCT
CCTAGATATAGCAAGGTTCCCCCCACCCTTTTTCATATATACTAAGGTGCAATTGATATACCTTGTGGTTTTTTATATGT
TTTAACGATTTGTTCAAATGTCAAAAGCTGAGGAGCACGGCGTGTTACTAATTGGACATGAGTAGAGAGTTGATGCCGGG
CTGTCACATACTCACATGGATTCACCTCTGTTATGATTTTTGACAAAGTATATATGAATGCGAGCGTTACTTGTACTGTG
GCCTGGACTGAAGCATGAGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis