Browse Element(s) Details


Os.6437.1.S1_at

Description gb:AK106754.1
DB_XREF= gi:32991963
TID=Os.6437.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative elicitor response protein (P0471B04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D04, full insert sequence.
FL= gb:AK106754.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6559011/11Galactosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein
LOC_Os01g65620Os.57203.1.S1_at11/111+38425786..38426477expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6437.1.S1_at--699--2091Chr01:38401267..38401291 (25 bp)
ACATCATCAGCTTTAATCGTAGCAT
LOC_Os01g65590
Os.6437.1.S1_at--557--511Chr01:38401282..38401306 (25 bp)
ATCGTAGCATTAATCTTTGGTTTTA
LOC_Os01g65590
Os.6437.1.S1_at--621--7871Chr01:38401300..38401324 (25 bp)
GGTTTTATGATGGTGCAAAGCAGCT
LOC_Os01g65590
Os.6437.1.S1_at--1110--1291Chr01:38401370..38401394 (25 bp)
AGATGATTAGGAAACGAGCCACGTA
LOC_Os01g65590
Os.6437.1.S1_at--289--5531Chr01:38401427..38401451 (25 bp)
GAAATGCATGGGTGGTAACTGTAAA
LOC_Os01g65590
Os.6437.1.S1_at--433--7651Chr01:38401483..38401507 (25 bp)
GGGAGTTGGGTCATGCCATATGCTT
LOC_Os01g65590
Os.6437.1.S1_at--756--10211Chr01:38401512..38401536 (25 bp)
TATTAATCACAGCTCTTTCTGCATT
LOC_Os01g65590
Os.6437.1.S1_at--1067--6651Chr01:38401578..38401602 (25 bp)
GTTGAATTCTTATAGTCACCCTTTA
LOC_Os01g65590
Os.6437.1.S1_at--767--10051Chr01:38401590..38401614 (25 bp)
TAGTCACCCTTTATATAGTTCGTTT
LOC_Os01g65590
Os.6437.1.S1_at--1135--2851Chr01:38401625..38401649 (25 bp)
AAGTGCAGCCGTGAGATGTAATTTC
LOC_Os01g65590
Os.6437.1.S1_at--389--6271Chr01:38401639..38401663 (25 bp)
GATGTAATTTCTACTCTCAAACTAA
LOC_Os01g65590
Target Sequence 
ACATCATCAGCTTTAATCGTAGCATTAATCTTTGGTTTTATGATGGTGCAAAGCAGCTAGCGGGCGACGAGGGGACTAGT
TTAACTGAATGATCGATTGTTTCAGATGATTAGGAAACGAGCCACGTAGAATGGATGAACGTGCATGATGGTGGAAAATG
GAAATGCATGGGTGGTAACTGTAAAAGTGTAAAGGCTNTAGCATCCAATTTCCAGGGGGAGTTGGGTCATGCCATATGCT
TCACTTATTAATCACAGCTCTTTCTGCATTTTTANNNNNTCCTTCAGAACGCAAGTTTTTTTTTATGATTAGTTGAATTC
TTATAGTCACCCTTTATATAGTTCGTTTACCTTTCAAAAAGTGCAGCCGTGAGATGTAATTTCTACTCTCAAACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis