Browse Element(s) Details


Os.33977.2.S1_x_at

Description gb:NM_190128.1
DB_XREF= gi:34907339
GEN=P0471B04.4
TID=Os.33977.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33977 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0471B04.4 (P0471B04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0471B04.4 (P0471B04.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6558010/11Mitotic checkpoint protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed
LOC_Os01g65610OsAffx.16663.1.S1_s_at11/111+38415444..38421051hypothetical protein
LOC_Os01g65610OsAffx.16663.1.S1_x_at7/111+38415444..38421051hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007093biological_processmitotic checkpoint
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0042646cellular_componentplastid nucleoid
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33977.2.S1_x_at--449--1251Chr01:38395337..38395361 (25 bp)
AGATCAACTACGCTCACAGGTGGCT
LOC_Os01g65580
Os.33977.2.S1_x_at--622--3311Chr01:38395351..38395375 (25 bp)
CACAGGTGGCTTTACTTGAGTCAAA
LOC_Os01g65580
Os.33977.2.S1_x_at--805--2351NONE
AAAGCTGGGCCATGGAGATTACTCT
NONE
Os.33977.2.S1_x_at--836--6551Chr01:38396017..38396041 (25 bp)
GATTACTCTGCCTCTAGCACAAAAG
LOC_Os01g65580
Os.33977.2.S1_x_at--218--1211Chr01:38396630..38396654 (25 bp)
AGTTTTCCGAAAGGCTTGCTGCTCG
LOC_Os01g65580
Os.33977.2.S1_x_at--280--9111Chr01:38396646..38396669 (24 bp)
TGCTGCTCGCTCTTTGGTTATAAGA
LOC_Os01g65580
Os.33977.2.S1_x_at--490--791Chr01:38397184..38397208 (25 bp)
ATGGGATCCCTGTAACACGTTTTAT
LOC_Os01g65580
Os.33977.2.S1_x_at--907--10211Chr01:38397206..38397230 (25 bp)
TATTCTGCATTCTGTTTACGCCCAA
LOC_Os01g65580
Os.33977.2.S1_x_at--1003--6851Chr01:38397251..38397275 (25 bp)
GTTTGACTACGAATCTGGAAGCACC
LOC_Os01g65580
Os.33977.2.S1_x_at--642--2331Chr01:38397929..38397953 (25 bp)
AAAGATGAATTCTATCCCGGCCTTC
LOC_Os01g65580
Os.33977.2.S1_x_at--482--8431Chr01:38397947..38397971 (25 bp)
GGCCTTCACAGCTAACCTGACAATG
LOC_Os01g65580
Target Sequence 
AGATCAACTACGCTCACAGGTGGCTTTACTTGAGTCAAAGCTGGGCCATGGAGATTACTCTGCCTCTAGCACAAAAGTAC
TGCGTATGGTAAATACTCTTGCAGTGGACAATGAAGCAAAGCAGACTATAGAGGCATTGCAAGCTGAATTGAAGAAAACG
AAAGAGAGGCTACAAGCAGTTGAAGAACTAAAAGGACAAGCTGATGTTGGAACTGTGGTTGATGTGAATATTGCTGAAAA
GCTAGCACAGCTTAAAAATCAAATTGCAACCCTAGAGAAACGTGAAGAAAGATATAAGGCAGTATTTGCAGAGAGGATCT
CAGTTTTCCGAAAGGCTTGCTGCTCGCTCTTTGGTTATAAGATAGTGATGAATGATCAGCAACAGTCAAATGGGATCCCT
GTAACACGTTTTATTCTGCATTCTGTTTACGCCCAAAGTGATGATGAGAAGCTTGAGTTTGACTACGAATCTGGAAGCAC
CAATATTGTGGTAGATATTTTCATACGAAAGATGAATTCTATCCCGGCCTTCACAGCTAACCTGACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33977.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis