Browse Element(s) Details


Os.42681.1.S1_at

Description gb:CA753737
DB_XREF= gi:25797776
DB_XREF=BR040001000_PLATE_C02_11_008.ab1
CLONE=BR040001000_PLATE_C02_11_008.ab1
TID=Os.42681.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative SnRK1-interacting protein 1 (P0698A10.30), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6556010/11SnRK1-interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65600Os.26297.1.S1_at11/111+38408524..38412329PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42681.1.S1_at--317--2771Chr01:38384359..38384383 (25 bp)
AAGACGCGCGTCGAAGATGGCTTCT
LOC_Os01g65560
Os.42681.1.S1_at--864--2791Chr01:38384346..38384370 (25 bp)
AAGATGGCTTCTCCCTGAAGTACAT
LOC_Os01g65560
Os.42681.1.S1_at--582--5331NONE
GAAGTACATCCCATGGCACATTGTT
NONE
Os.42681.1.S1_at--793--2971Chr01:38383540..38383564 (25 bp)
AATGGTCTGGCGAGGTTCGCAGCAT
LOC_Os01g65560
Os.42681.1.S1_at--100--7911Chr01:38383527..38383551 (25 bp)
GGTTCGCAGCATTGTTTATTCATCT
LOC_Os01g65560
Os.42681.1.S1_at--1054--471Chr01:38383494..38383518 (25 bp)
ATCTGTATCTGTTATTTATCGCGTG
LOC_Os01g65560
Os.42681.1.S1_at--1146--171Chr01:38383481..38383505 (25 bp)
ATTTATCGCGTGACTCTCCATGGAA
LOC_Os01g65560
Os.42681.1.S1_at--993--3331Chr01:38382860..38382884 (25 bp)
CACTGGAACTTCTTCTGCTGATGAT
LOC_Os01g65560
Os.42681.1.S1_at--562--8551Chr01:38382827..38382851 (25 bp)
TGGAGATCCTGTGCAGAAGGCTGAA
LOC_Os01g65560
Os.42681.1.S1_at--433--1551Chr01:38382785..38382809 (25 bp)
AGCTTGTACCCGTCTTGGTCTTGGA
LOC_Os01g65560
Os.42681.1.S1_at--511--9591Chr01:38382773..38382797 (25 bp)
TCTTGGTCTTGGACTTCATCTCTAT
LOC_Os01g65560
Target Sequence 
AAGACGCGCGTCGAAGATGGCTTCTCCCTGAAGTACATCCCATGGCACATTGTTAACAAAATTCTGAATATACATGCTCC
AGAATGGTCTGGCGAGGTTCGCAGCATTGTTTATTCATCTGATGGAAAATCTGTATCTGTTATTTATCGCGTGACTCTCC
ATGGAACTGATGCAGAGATCTACAGAGAAGCCACTGGAACTTCTTCTGCTGATGATACAGGCTATGGAGATCCTGTGCAG
AAGGCTGAAGCAATGGCTTTTCGCCGAGCTTGTACCCGTCTTGGTCTTGGACTTCATCTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis