Browse Element(s) Details


OsAffx.23927.1.S1_x_at

Description gb:NM_190125.1
DB_XREF= gi:34907333
GEN=P0698A10.29
TID=OsAffx.23927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0698A10.29 (P0698A10.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6555011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65510Os.15941.2.S1_x_at11/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65510OsAffx.15285.1.S1_at1/111+38349637..38350989F-box domain containing protein, expressed
LOC_Os01g65520Os.26261.1.S1_at11/111+38353509..38357030membrane protein, putative, expressed
LOC_Os01g65530Os.16006.1.S1_s_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.10577.1.S1_x_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65530Os.16006.1.S1_at11/111+38358347..38362545RNA recognition motif family protein, expressed
LOC_Os01g65540OsAffx.23926.2.S1_s_at11/111+38367749..38369468hypothetical protein
LOC_Os01g65540OsAffx.23926.2.S1_at7/111+38367749..38369468hypothetical protein
LOC_Os01g65550OsAffx.23927.2.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550OsAffx.23927.1.S1_x_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65550Os.14100.1.S1_at11/111+38374909..38381202RNA recognition motif family protein, expressed
LOC_Os01g65560Os.42681.1.S1_at10/111+38382538..38384669SnRK1-interacting protein 1, putative, expressed
LOC_Os01g65580Os.33977.1.S1_at11/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65580Os.33977.2.S1_x_at10/111+38391296..38398541Mitotic checkpoint protein, expressed
LOC_Os01g65590Os.6437.1.S1_at11/111+38398939..38401703Galactosyltransferase family protein, expressed
LOC_Os01g65590OsAffx.11744.1.S1_x_at11/111+38398939..38401703Galactosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23927.1.S1_x_at--104--6331Chr01:38376428..38376452 (25 bp)
GATGAAGTCCTTTAGCCAGCAGGCA
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--29--2911Chr01:38376520..38376544 (25 bp)
AAGGTCTCCCTTACCATGTCTATGG
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--125--771Chr01:38376535..38376935 (25 bp)
ATGTCTATGGGTACTCTCCCTATTC
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--510--9311Chr01:38376927..38376951 (25 bp)
TCCCTATTCTCCAGACTACAGTTAT
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--595--8011Chr01:38379214..38379238 (25 bp)
GGAGGAGCTCAATACCCATTTTATG
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--1019--5371Chr01:38379284..38379308 (25 bp)
GAAGCAGCCCCTTTTATCCATATTT
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--152--4851Chr01:38379359..38379383 (25 bp)
GCTACAACTTGCAATACCCACAGAT
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--124--6291Chr01:38379381..38379405 (25 bp)
GATGTTTCACTTCTCAACTGTGGCT
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--379--2571Chr01:38379396..38379420 (25 bp)
AACTGTGGCTTCTACAGCTGCTGCT
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--301--1091Chr01:38379447..38379471 (25 bp)
AGGGCCATTGTCTCTTGCAGCGAGT
LOC_Os01g65550
OsAffx.23927.1.S1_x_at--1073--7671Chr01:38380432..38380456 (25 bp)
GGGTTCATGCTGATACAGGCCAATT
LOC_Os01g65550
Target Sequence 
GATGAAGTCCTTTAGCCAGCAGGCAGGGATCCAAGGTGGTCTGGGCGCAGCTTTTCCTTCTCACGCCACCTTCCCCCATT
ATGCTATCCCACAAGGTCTCCCTTACCATGTCTATGGGTACTCTCCCTATTCTCCAGACTACAGTTATCCCACAAACTAC
TACAACATCTACGGAGGAGCTCAATACCCATTTTATGGAGCGGCGGCGGCGGCGGCAGCAGCAGCAGCTGGCATGGTGAC
TGGAAGCAGCCCCTTTTATCCATATTTCCAGTTTGGGCAATCAGGAAGCACTACAACCAACTATGCAAGTGGACAAGGCT
ACAACTTGCAATACCCACAGATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAA
TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAA
TCAAGCATTAACCCAGGGAGGGTTCATGCTGATACAGGCCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis