Browse Element(s) Details


Os.26354.1.S1_a_at

Description gb:AB078881.1
DB_XREF= gi:29420480
GEN=CRTintP
TID=Os.26354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26354 (NCBI UniGene Cluster)
DEF=Oryza sativa CRTintP mRNA for calreticulin interacted protein, complete cds.
PROD=calreticulin interacted protein
FL= gb:AB078881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3154011/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31500Os.11234.1.S1_x_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31500Os.11234.1.S1_at11/117+18686698..18690611Leucine Rich Repeat family protein, expressed
LOC_Os07g31510NANA7+18693323..18694310hypothetical protein
LOC_Os07g31519NANA7+18709193..18709585NA
LOC_Os07g31530OsAffx.1383.1.S1_at11/117+18712239..18715219retrotransposon protein, putative, unclassified
LOC_Os07g31540Os.26354.1.S1_a_at11/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31540Os.26354.2.S1_x_at10/117+18715340..18723960Ubiquitin family protein, expressed
LOC_Os07g31550Os.53555.1.S1_at11/117+18726294..18731858expressed protein
LOC_Os07g31560OsAffx.28701.2.S1_at11/117+18738691..18739715hypothetical protein
LOC_Os07g31570NANA7+18741704..18742150hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26354.1.S1_a_at--777--51Chr07:18716715..18716739 (25 bp)
ATTGACTTGTCTAGAATGATGCAGC
LOC_Os07g31540
Os.26354.1.S1_a_at--687--711Chr07:18716688..18716712 (25 bp)
ATGATGCCTGTTGTATCCCAAGTTC
LOC_Os07g31540
Os.26354.1.S1_a_at--371--4811Chr07:18716649..18716673 (25 bp)
GCTCGTCCTGCTGGTACAAATAGTG
LOC_Os07g31540
Os.26354.1.S1_a_at--758--3031Chr07:18716621..18716645 (25 bp)
AATCCAGATTGCAGCCTCGGCGCAG
LOC_Os07g31540
Os.26354.1.S1_a_at--52--1691Chr07:18716609..18716633 (25 bp)
AGCCTCGGCGCAGTGACATGAGAGT
LOC_Os07g31540
Os.26354.1.S1_a_at--710--6591Chr07:18716303..18716327 (25 bp)
GATTGATCTACACCAAGCTCGTGAA
LOC_Os07g31540
Os.26354.1.S1_a_at--1066--6491Chr07:18716251..18716275 (25 bp)
GATATCTTCGGTGCGGTCCTCGAAA
LOC_Os07g31540
Os.26354.1.S1_a_at--315--2391Chr07:18716229..18716253 (25 bp)
AAACTGCTGCACAGGCTTATGGTGA
LOC_Os07g31540
Os.26354.1.S1_a_at--1027--9091Chr07:18715809..18715833 (25 bp)
TGCTCCAACAAGTTCGCCAGAGGAT
LOC_Os07g31540
Os.26354.1.S1_a_at--503--1331Chr07:18715791..18715815 (25 bp)
AGAGGATACAGTCGGCATCTCAATC
LOC_Os07g31540
Os.26354.1.S1_a_at--688--451Chr07:18715775..18715799 (25 bp)
ATCTCAATCCGGGAACCAGTCTTGA
LOC_Os07g31540
Target Sequence 
ATTGACTTGTCTAGAATGATGCAGCAAATGATGCCTGTTGTATCCCAAGTTCTTGGTGGAGCTGGGGCTCGTCCTGCTGG
TACAAATAGTGGACAATCCAGATTGCAGCCTCGGCGCAGTGACATGAGAGTGGATGATGCTTCAGATTATGGAAATTCTC
AGATTGATCTACACCAAGCTCGTGAACACATTGAGCAACATGACTCCCCCAGGGATATCTTCGGTGCGGTCCTCGAAACT
GCTGCACAGGCTTATGGTGAAGATGAGAGTATTGAGGACATGCTTGAAGAGCTTGTCAGTGACCCAGAACTTACAGATGA
CTACCTGAAACTTCTGCTCCAACAAGTTCGCCAGAGGATACAGTCGGCATCTCAATCCGGGAACCAGTCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26354.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis