Browse Element(s) Details


Os.26399.1.S1_at

Description gb:AY177702.1
DB_XREF= gi:30313688
TID=Os.26399.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26399 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS57 mRNA, complete cds.
PROD=transcription factor MADS57
FL= gb:AY177702.1 gb:AY224482.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4984010/11Agamous-like MADS box protein AGL21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49770Os.50746.1.S1_at11/112+30421851..30425872NHL repeat-containing protein, putative, expressed
LOC_Os02g49780Os.9055.1.S1_at11/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_x_at1/112+30426278..30428217expressed protein
LOC_Os02g49780OsAffx.30922.1.S1_at1/112+30426278..30428217expressed protein
LOC_Os02g49790OsAffx.3020.1.S1_at11/112+30429159..30431646expressed protein
LOC_Os02g49800Os.10843.1.S1_at11/112+30432084..30435591Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g49810OsAffx.3021.1.S1_at11/112+30436599..30436965hypothetical protein
LOC_Os02g49820Os.52416.1.S1_at11/112+30439080..30442151RNA recognition motif family protein, expressed
LOC_Os02g49830OsAffx.24799.1.S1_at11/112+30442173..30443713PPR986-12, putative, expressed
LOC_Os02g49840OsAffx.12568.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49840Os.26399.1.S1_at10/112+30450833..30456821Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g49850OsAffx.12569.1.S1_at11/112+30461715..30462567Chemocyanin precursor, putative, expressed
LOC_Os02g49860NANA2+30463622..30464149ABA induced plasma membrane protein PM 19, putative
LOC_Os02g49870Os.12058.1.S1_at11/112+30466113..30467246expressed protein
LOC_Os02g49880Os.50246.1.S1_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.2.S1_x_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49880Os.50246.1.S2_at11/112+30467260..30469904CCT motif family protein, expressed
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007584biological_processresponse to nutrient
GO:0048440biological_processcarpel development
GO:0048481biological_processovule development
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26399.1.S1_at--569--10591NONE
TTCTCCAGCACCAACATGAAAACTG
NONE
Os.26399.1.S1_at--306--2571Chr02:30452481..30452505 (25 bp)
AACTGTGATAGACCGGTATACCAAC
LOC_Os02g49840
Os.26399.1.S1_at--971--9971Chr02:30452499..30452523 (25 bp)
TACCAACGCAAAGGAGGAGCTACTT
LOC_Os02g49840
Os.26399.1.S1_at--77--4851Chr02:30452517..30452541 (25 bp)
GCTACTTGGCGGGAATGCAACTTCA
LOC_Os02g49840
Os.26399.1.S1_at--518--6071Chr02:30456019..30456142 (25 bp)
GAGTTACATGTGAAGGGAAGCCTAA
LOC_Os02g49840
Os.26399.1.S1_at--370--3711Chr02:30456205..30456312 (25 bp)
CTGTATAACAAGCTTCAGGCCTGTG
LOC_Os02g49840
Os.26399.1.S1_at--327--5211Chr02:30456402..30456426 (25 bp)
GAATTGAGCCAATCACAGCAAAGAG
LOC_Os02g49840
Os.26399.1.S1_at--1141--2411Chr02:30456441..30456463 (23 bp)
AAAACAGCTGCTCCAGAACTGGGAC
LOC_Os02g49840
Os.26399.1.S1_at--980--1431Chr02:30456455..30456566 (25 bp)
AGAACTGGGACTTCATCTGCCTTAA
LOC_Os02g49840
Os.26399.1.S1_at--479--471Chr02:30456556..30456580 (25 bp)
ATCTGCCTTAAGACTATGCCGTACA
LOC_Os02g49840
Os.26399.1.S1_at--1142--5671Chr02:30456567..30456591 (25 bp)
GACTATGCCGTACAAGCTGGACGAT
LOC_Os02g49840
Target Sequence 
TTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTC
AGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGA
TGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATC
AGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACAT
CGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAACTGTATAACAAGCTTCAGGCCTGTGAACAGAGAG
GTGCCACAGATGCAAATGAAAGTTCCAGCACTCCATACAGCTTTCGTATCATACAAAATGCTAATATGCCTCCTAGTCTT
GAATTGAGCCAATCACAGCAAAGAGAAGGGGAGTGCAGCAAAACAGCTGCTCCAGAACTGGGACTTCATCTGCCTTAAGA
CTATGCCGTACAAGCTGGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis