Browse Element(s) Details


Os.26434.1.S1_at

Description gb:AK065016.1
DB_XREF= gi:32975034
TID=Os.26434.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F14, full insert sequence.
FL= gb:AK065016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4027011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26434.1.S1_at--476--3031Chr07:24136803..24136827 (25 bp)
AATGCCTTCCTATCCTGATCGATAT
LOC_Os07g40270
Os.26434.1.S1_at--154--9031Chr07:24136743..24136767 (25 bp)
TGCAACATATGATCCTCCTGCTTAT
LOC_Os07g40270
Os.26434.1.S1_at--325--10491Chr07:24136713..24136737 (25 bp)
TTACAGCGAACCATACAGTGCCTCA
LOC_Os07g40270
Os.26434.1.S1_at--862--5051Chr07:24136565..24136589 (25 bp)
GCAGCAGGGCAGTCTACTTCGAGTA
LOC_Os07g40270
Os.26434.1.S1_at--1081--6951Chr07:24136543..24136567 (25 bp)
GTAGCTATTCGGGTTATTCTGGTTA
LOC_Os07g40270
Os.26434.1.S1_at--803--4951Chr07:24136490..24136514 (25 bp)
GCATTTGCTATGCTACGCTGGTTAT
LOC_Os07g40270
Os.26434.1.S1_at--180--5131Chr07:24136459..24136483 (25 bp)
GCACAATCTGGCTATCAATCTCGTT
LOC_Os07g40270
Os.26434.1.S1_at--498--10511Chr07:24136429..24136453 (25 bp)
TTCAGACCCCAGATGTAACCTTTAG
LOC_Os07g40270
Os.26434.1.S1_at--678--431Chr07:24136366..24136390 (25 bp)
ATCTTGATCTTCCAAGGCTGGTCGT
LOC_Os07g40270
Os.26434.1.S1_at--211--10411Chr07:24136310..24136334 (25 bp)
TTTTGTCCTGCTACATGTATCCAGT
LOC_Os07g40270
Os.26434.1.S1_at--324--3071Chr07:24136283..24136307 (25 bp)
AATACTGTTGCGTGTACCTAACCTG
LOC_Os07g40270
Target Sequence 
AATGCCTTCCTATCCTGATCGATATGGACATGCAGATCGGTACCATTACACTGCACCCTCTGCAACATATGATCCTCCTG
CTTATGCTTCTTACAGCGAACCATACAGTGCCTCAAAGCCATACCAGTACACACCAGGCTCAGTAGCTCCTGCATCATAC
AACTCGAATCAGTTCAAAGTAGCTTATGGTGGACCTGGTGCCCCGCCAACAGCAGGCGGCTACGGAAGCTACAACGATGC
AGCAGGGCAGTCTACTTCGAGTAGCTATTCGGGTTATTCTGGTTACCACCCTTCACTACCAAGGTTATAACTTGCATTTG
CTATGCTACGCTGGTTATGATAAAGCACAATCTGGCTATCAATCTCGTTCAGAGTTCAGACCCCAGATGTAACCTTTAGA
TATACTCTAGTGGATTTTGTAGCTGTAACTGGTGTAGATCTTGATCTTCCAAGGCTGGTCGTGTGAGAAGCCGGTCGATT
TTAGAGACTTTTTTTTTGTCCTGCTACATGTATCCAGTTGAATACTGTTGCGTGTACCTAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis