Browse Element(s) Details


Os.51601.1.S1_at

Description gb:AK063147.1
DB_XREF= gi:32973165
TID=Os.51601.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H03, full insert sequence.
FL= gb:AK063147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4030011/11Zinc finger protein 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g40280OsAffx.5583.1.S1_at11/117+24144082..24144708hypothetical protein
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51601.1.S1_at--12--1451Chr07:24162715..24162739 (25 bp)
AGCAGGTAAGCTTCCCGAGTCGAAT
LOC_Os07g40300
Os.51601.1.S1_at--907--4051Chr07:24162730..24162754 (25 bp)
CGAGTCGAATCCGAAGCCGGCCGTG
LOC_Os07g40300
Os.51601.1.S1_at--948--7531Chr07:24162752..24162776 (25 bp)
GTGGCGGCGCCGCATAGAACCTTCT
LOC_Os07g40300
Os.51601.1.S1_at--120--1511Chr07:24162882..24162906 (25 bp)
AGCAGCAGCATCTCATGGTTGGGCT
LOC_Os07g40300
Os.51601.1.S1_at--548--7211Chr07:24162925..24162949 (25 bp)
GTCGTTTCTTCACCACATGAGGGTT
LOC_Os07g40300
Os.51601.1.S1_at--209--1811Chr07:24162957..24162981 (25 bp)
ACGCCACGATCCTGAAGGTGAACCG
LOC_Os07g40300
Os.51601.1.S1_at--240--2891Chr07:24162971..24162995 (25 bp)
AAGGTGAACCGTGGCTATTCTTCTG
LOC_Os07g40300
Os.51601.1.S1_at--1101--8791Chr07:24163003..24163027 (25 bp)
TGTTGTCGTGGCGAAATTCCATGGA
LOC_Os07g40300
Os.51601.1.S1_at--444--2111Chr07:24163066..24163090 (25 bp)
ACATGGTAGAGGGTCAGTCTGGCCT
LOC_Os07g40300
Os.51601.1.S1_at--745--5351Chr07:24163136..24163160 (25 bp)
GAAGATCTTGACTTGAGCCTGCGGT
LOC_Os07g40300
Os.51601.1.S1_at--1146--5851Chr07:24163150..24163174 (25 bp)
GAGCCTGCGGTTATAAGTTTGTAGT
LOC_Os07g40300
Target Sequence 
AGCAGGTAAGCTTCCCGAGTCGAATCCGAAGCCGGCCGTGGCGGCGCCGCATAGAACCTTCTCCTGCAACTACTGCATGA
GGAAGTTCTTCAGCTCGCAGGCGCNTGGGTGGGCACCAGAACGCCCACAAGAGGGAGAGGTGCGCGCCGAGGAAGTCGCA
CGGCTTCCAGCAGCAGCATCTCATGGTTGGGCTCTCCCCGACTGCACCGTCGTCGTTTCTTCACCACATGAGGGTTAACC
CTCACGCCACGATCCTGAAGGTGAACCGTGGCTATTCTTCTGCTGATGGNTGTTGTCGTGGCGAAATTCCATGGAGGCCA
GATGAGTAGCAGCTGGGTGNCTTTTGCGGTTGAACATGGTAGAGGGTCAGTCTGGCCTGGGAGCTTCAAAGCAAGCTCTC
AGGAGCAGAAGAAGCGCACGGAGGAAGATCTTGACTTGAGCCTGCGGTTATAAGTTTGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis