Browse Element(s) Details


OsAffx.5584.1.S1_at

Description tigr:9635.m04027
TID=OsAffx.5584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Got1-like family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g403203/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5584.1.S1_at--333--2891Chr07:24181111..24181135 (25 bp)
AAGGGATGCCGGGTCACCTCCAAAG
LOC_Os07g40320
OsAffx.5584.1.S1_at--127--7931Chr07:24181114..24181138 (25 bp)
GGATGCCGGGTCACCTCCAAAGAAA
LOC_Os07g40320
OsAffx.5584.1.S1_at--934--9051Chr07:24181117..24181141 (25 bp)
TGCCGGGTCACCTCCAAAGAAACTT
LOC_Os07g40320
OsAffx.5584.1.S1_at--631--3511Chr07:24181151..24181175 (25 bp)
CATGCGGTTTTTTCTGGTTAGCTTG
NONE
OsAffx.5584.1.S1_at--780--9091Chr07:24181153..24181177 (25 bp)
TGCGGTTTTTTCTGGTTAGCTTGTG
NONE
OsAffx.5584.1.S1_at--409--9012Chr07:24181200..24181224 (25 bp)
TGAATCTTGTGTCTCTGCTACCAGT
NONE
OsAffx.5584.1.S1_at--325--5252Chr07:24181201..24181225 (25 bp)
GAATCTTGTGTCTCTGCTACCAGTA
NONE
OsAffx.5584.1.S1_at--435--3071Chr07:24181202..24181226 (25 bp)
AATCTTGTGTCTCTGCTACCAGTAC
NONE
OsAffx.5584.1.S1_at--51--431Chr07:24181203..24181227 (25 bp)
ATCTTGTGTCTCTGCTACCAGTACC
NONE
OsAffx.5584.1.S1_at--729--10831Chr07:24181206..24181230 (25 bp)
TTGTGTCTCTGCTACCAGTACCCTG
NONE
OsAffx.5584.1.S1_at--923--8671Chr07:24181207..24181231 (25 bp)
TGTGTCTCTGCTACCAGTACCCTGC
NONE
Target Sequence 
AAGGGATGCCGGGTCACCTCCAAAGAAACTTAGAGCGATACATGCGGTTTTTTCTGGTTAGCTTGTGATTCGTTGGTGCT
GCTGGTATGTGAATCTTGTGTCTCTGCTACCAGTACCCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis