Browse Element(s) Details


OsAffx.16651.1.S1_at

Description tigr:9635.m04026
TID=OsAffx.16651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g403107/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16651.1.S1_at--106--4231Chr07:24173586..24173610 (25 bp)
CCGAAGAAGCGAAGCCGCCGGACGA
LOC_Os07g40310
OsAffx.16651.1.S1_at--336--4111Chr07:24173585..24173609 (25 bp)
CGAAGAAGCGAAGCCGCCGGACGAC
LOC_Os07g40310
OsAffx.16651.1.S1_at--736--3511NONE
CATGTAGCTGACAGTTTTACTTTGC
NONE
OsAffx.16651.1.S1_at--653--6951NONE
GTAGCTGACAGTTTTACTTTGCTCC
NONE
OsAffx.16651.1.S1_at--247--9991NONE
TAGCTGACAGTTTTACTTTGCTCCT
NONE
OsAffx.16651.1.S1_at--29--1591NONE
AGCTGACAGTTTTACTTTGCTCCTC
NONE
OsAffx.16651.1.S1_at--551--4751Chr07:24170494..24170869 (25 bp)
GCTGACAGTTTTACTTTGCTCCTCC
LOC_Os07g40310
OsAffx.16651.1.S1_at--426--3851Chr07:24170493..24170513 (21 bp)
CTGACAGTTTTACTTTGCTCCTCCT
LOC_Os07g40310
OsAffx.16651.1.S1_at--1028--8951Chr07:24170492..24170513 (22 bp)
TGACAGTTTTACTTTGCTCCTCCTG
LOC_Os07g40310
OsAffx.16651.1.S1_at--565--5651Chr07:24170491..24170513 (23 bp)
GACAGTTTTACTTTGCTCCTCCTGA
LOC_Os07g40310
OsAffx.16651.1.S1_at--406--2131Chr07:24170490..24170513 (24 bp)
ACAGTTTTACTTTGCTCCTCCTGAT
LOC_Os07g40310
Target Sequence 
CCGAAGAAGCGAAGCCGCCGGACGACGACGGGGCGGCGGCGAAGCTCGACGTGCGGGCGAGGAGGTGGCCGCGGTTCCCG
GCGACGGACGGGCAGCTGGTGATGGGGGAGTCGAGGAGGAAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTG
CTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCAGCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGG
CCGTCAGTAAGCACCAGGACATTGAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAGTTTTACT
TTGCTCCTCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis