Browse Element(s) Details


Os.7030.1.S1_s_at

Description gb:AK121652.1
DB_XREF= gi:37991275
TID=Os.7030.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061B14, full insert sequence.
FL= gb:AK121652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4031011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40290Os.11798.1.S1_at11/117+24148005..24150362indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7030.1.S1_s_at--950--2911Chr07:24172662..24172686 (25 bp)
AAGGAGGAGTACATCTGCTTCCCAG
LOC_Os07g40310
Os.7030.1.S1_s_at--315--991Chr07:24172658..24172682 (25 bp)
AGGAGTACATCTGCTTCCCAGAGCA
LOC_Os07g40310
Os.7030.1.S1_s_at--745--1171Chr07:24172655..24172679 (25 bp)
AGTACATCTGCTTCCCAGAGCACCT
LOC_Os07g40310
Os.7030.1.S1_s_at--796--9011Chr07:24172021..24172045 (25 bp)
TGCAAGCACCAGTTAGCAGCCCGAC
LOC_Os07g40310
Os.7030.1.S1_s_at--848--1211Chr07:24172011..24172035 (25 bp)
AGTTAGCAGCCCGACTTGCGGAGGC
LOC_Os07g40310
Os.7030.1.S1_s_at--312--10691Chr07:24171996..24172020 (25 bp)
TTGCGGAGGCCGTCAGTAAGCACCA
LOC_Os07g40310
Os.7030.1.S1_s_at--78--6231Chr07:24171991..24172015 (25 bp)
GAGGCCGTCAGTAAGCACCAGGACA
LOC_Os07g40310
Os.7030.1.S1_s_at--110--4251Chr07:24171987..24172011 (25 bp)
CCGTCAGTAAGCACCAGGACATTGA
LOC_Os07g40310
Os.7030.1.S1_s_at--552--1571Chr07:24171777..24171801 (25 bp)
AGCTAGATGAGTTATCCTCGAATAT
LOC_Os07g40310
Os.7030.1.S1_s_at--1116--551Chr07:24171764..24171788 (25 bp)
ATCCTCGAATATTAGGCGTTCTCAT
LOC_Os07g40310
Os.7030.1.S1_s_at--116--10451Chr07:24171753..24171777 (25 bp)
TTAGGCGTTCTCATGTAGCTGACAG
LOC_Os07g40310
Target Sequence 
AAGGAGGAGTACATCTGCTTCCCAGAGCACCTCTGCACCTGCTACTCCTTCTTCTACGACATCGTCGGCCGCGGCGAGCA
GCTCTGCTGCAAGCACCAGTTAGCAGCCCGACTTGCGGAGGCCGTCAGTAAGCACCAGGACATTGAGGTAACCGATGAGG
AGTTGGCCCACATGCTTGCTAAACTCTGAAAGTTTCAGAATTTCGGTACTTCAGCAATGCACATGAAGTTTGGGACGAAT
TGATTTTTAAGAAGGATTCTAACACTAGTACCGTTGTGCAAAATGACTGATCTCAGTGCAAAGAACTGAATGATGCTTGC
TATATAATATCAGCTAGATGAGTTATCCTCGAATATTAGGCGTTCTCATGTAGCTGACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7030.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis