Browse Element(s) Details


Os.11008.1.S1_at

Description gb:AU101264
DB_XREF= gi:9865514
DB_XREF=AU101264
CLONE=E4077
TID=Os.11008.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11008 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4032011/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11008.1.S1_at--201--9771Chr07:24176205..24176229 (25 bp)
TAAGGTGTTTGGTTTGGCCCTGCGC
LOC_Os07g40320
Os.11008.1.S1_at--978--10231Chr07:24176212..24176236 (25 bp)
TTTGGTTTGGCCCTGCGCTTAGATC
LOC_Os07g40320
Os.11008.1.S1_at--557--3811Chr07:24176224..24176248 (25 bp)
CTGCGCTTAGATCCACCAAAGAACT
LOC_Os07g40320
Os.11008.1.S1_at--143--6371Chr07:24176233..24176257 (25 bp)
GATCCACCAAAGAACTGCTGCTATT
LOC_Os07g40320
Os.11008.1.S1_at--742--9111Chr07:24176248..24176272 (25 bp)
TGCTGCTATTTTGGCATTTCCTTGG
LOC_Os07g40320
Os.11008.1.S1_at--27--1271Chr07:24176273..24176297 (25 bp)
AGATTATTCATGATTTCCTCCGCTT
LOC_Os07g40320
Os.11008.1.S1_at--1025--10291Chr07:24176286..24176310 (25 bp)
TTTCCTCCGCTTATGATCACTAGTA
LOC_Os07g40320
Os.11008.1.S1_at--378--6451Chr07:24176300..24176324 (25 bp)
GATCACTAGTACCTTTATATAAGTA
LOC_Os07g40320
Os.11008.1.S1_at--337--6271Chr07:24176354..24176378 (25 bp)
GATGTTTGTTACTTGAACCTGGTAC
LOC_Os07g40320
Os.11008.1.S1_at--1038--5431Chr07:24176368..24176392 (25 bp)
GAACCTGGTACCTTGTTACAAATGT
LOC_Os07g40320
Os.11008.1.S1_at--261--431Chr07:24176402..24176426 (25 bp)
ATCATAGGTGCATGTTTGCCCTCGC
LOC_Os07g40320
Target Sequence 
TAAGGTGTTTGGTTTGGCCCTGCGCTTAGATCCACCAAAGAACTGCTGCTATTTTGGCATTTCCTTGGAGATTATTCATG
ATTTCCTCCGCTTATGATCACTAGTACCTTTATATAAGTATTAGGAATGTGTGCTTGAGATGATGAATTGATGTTTGTTA
CTTGAACCTGGTACCTTGTTACAAATGTTTAAGCTATATCATAGGTGCATGTTTGCCCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis