Browse Element(s) Details


Os.40002.1.S1_s_at

Description gb:CF315096
DB_XREF= gi:33686857
DB_XREF=HD--03-O04.g1
CLONE=HD--03-O04
TID=Os.40002.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40002 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T46220 (A.thaliana) T46220 hypothetical protein T9C5.20 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g403204/11Got1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40300Os.51601.1.S1_at11/117+24162531..24163300Zinc finger protein 7, putative, expressed
LOC_Os07g40310Os.51678.1.S1_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310Os.7030.1.S1_s_at11/117+24170450..24173716hypothetical protein
LOC_Os07g40310OsAffx.16651.1.S1_at7/117+24170450..24173716hypothetical protein
LOC_Os07g40320Os.11008.1.S1_at11/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320Os.40002.1.S1_s_at4/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40320OsAffx.5584.1.S1_at3/117+24175707..24181143Got1-like family protein, expressed
LOC_Os07g40330NANA7+24182336..24185029hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_x_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40340OsAffx.28843.1.S1_at11/117+24192928..24193296hypothetical protein
LOC_Os07g40350NANA7+24194665..24198239transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40360OsAffx.17678.1.S1_at1/117+24198440..24200433transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g40370OsAffx.28844.1.S1_at11/117+24204288..24206270hypothetical protein
LOC_Os07g40370OsAffx.30648.1.S1_at2/117+24204288..24206270hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40002.1.S1_s_at--1156--10611Chr07:24180701..24180864 (25 bp)
TTCGTCAAGCTCTTCAGAGGCTTCT
LOC_Os07g40320
Os.40002.1.S1_s_at--649--3251Chr07:24180868..24180892 (25 bp)
CAACTGCTGCTGTTTACCTGCAAAA
LOC_Os07g40320
Os.40002.1.S1_s_at--592--2771Chr07:24180891..24180915 (25 bp)
AAGAGCCCCACCTTCGGTTGGATAT
LOC_Os07g40320
Os.40002.1.S1_s_at--45--7371Chr07:24180930..24181055 (25 bp)
GTGACTTCGCTGATCACTAGGTTCA
LOC_Os07g40320
Os.40002.1.S1_s_at--662--10851Chr07:24181183..24181207 (25 bp)
TTGGTGCTGCTGGTATGTGAATCTT
NONE
Os.40002.1.S1_s_at--299--4351Chr07:24181257..24181281 (25 bp)
CCAGTTGCCCAGTTGTTCGTAGAAA
NONE
Os.40002.1.S1_s_at--921--1372Chr07:24238079..24238103 (25 bp)
AGACTTTCTTGCTTGTTAATGGGTA
NONE
Os.40002.1.S1_s_at--310--7692Chr07:24238108..24238132 (25 bp)
GGGTAGTCATCGTACATATGGCTAT
NONE
Os.40002.1.S1_s_at--394--8311Chr07:24181336..24181360 (25 bp)
GGCTATGCTCATTGCACGATTGGTT
NONE
Os.40002.1.S1_s_at--773--6931Chr07:24181408..24181432 (25 bp)
GTAGCAAAAGCTTTCAGTTCCGGTG
NONE
Os.40002.1.S1_s_at--366--1231Chr07:24181423..24181447 (25 bp)
AGTTCCGGTGCTACGTATGACGTTC
NONE
Target Sequence 
TTCGTCAAGCTCTTCAGAGGCTTCTGGCCAACTGCTGCTGTTTACCTGCAAAAGAGCCCCACCTTCGGTTGGATATTCCA
CCACCCTCTTGTGACTTCGCTGATCACTAGGTTCAGGGGAAGACGAGTCCCGGTGTGATCGTCGCTTTGCTGCTGGAGCT
GGATCACTCCAAGGGATGCCNGGGTCACCTNCAAAGAAACTTAGAGCGATACATGCGGNTTTTTCTGGTTANGCTTGTGA
TTCGTTGGTGCTGCTGGTATGTGAATCTTGTGNCTNTGCTACCANTACCCTGCCTCAAAGACCTCGTTACTACGCTCGCC
AGTTGCCCAGTTGTTCGTAGAAACTAGAAAGACTTTCTTGCTTGTTAATGGGTAGAGAGGGTAGTCATCGTACATATGGC
TATGCTCATTGCACGATTGGTTGATTGCTAGTAATTGATTTGTAGGTCATCCTACGGGAATATTACTGAGTAGCAAAAGC
TTTCAGTTCCGGTGCTACGTATGACGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40002.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis