Browse Element(s) Details


Os.26453.1.S1_at

Description gb:AK065209.1
DB_XREF= gi:32975227
TID=Os.26453.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phosphoglycerate dehydrogenase (P0483E06.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002F16, full insert sequence.
FL= gb:AK065209.1 gb:AK104560.1 gb:AK104725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g160409/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g16010OsAffx.22385.1.S1_x_at11/117+9329217..9329843retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g16019NANA7+9333143..9333606NA
LOC_Os07g16030Os.53334.3.S1_at11/117+9343565..9345601hypothetical protein
LOC_Os07g16030Os.53334.1.S1_x_at6/117+9343565..9345601hypothetical protein
LOC_Os07g16040Os.26453.1.S1_s_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.2.S1_x_at11/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16040Os.26453.1.S1_at9/117+9351346..9356091D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os07g16054NANA7+9357880..9360614hypothetical protein
LOC_Os07g16070OsAffx.5345.1.S1_at11/117+9367436..9370474hypothetical protein
LOC_Os07g16070OsAffx.31070.1.S1_x_at1/117+9367436..9370474hypothetical protein
LOC_Os07g16080NANA7+9371282..9371701retrotransposon protein, putative, unclassified
LOC_Os07g16090Os.40855.5.S1_x_at11/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_at9/117+9375387..9378722hypothetical protein
LOC_Os07g16090Os.40360.1.S1_x_at8/117+9375387..9378722hypothetical protein
LOC_Os07g16090OsAffx.15821.2.S1_at4/117+9375387..9378722hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_at11/117+9380497..9381967hypothetical protein
LOC_Os07g16100OsAffx.16289.1.S1_x_at11/117+9380497..9381967hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26453.1.S1_at--38--5231Chr07:9355823..9355847 (25 bp)
GAATTTGTGAACTAAGCTCAGGAAA
LOC_Os07g16040
Os.26453.1.S1_at--67--7351Chr07:9355829..9355853 (25 bp)
GTGAACTAAGCTCAGGAAATGCGTG
LOC_Os07g16040
Os.26453.1.S1_at--1106--6451Chr07:9356015..9356039 (25 bp)
GATAATTCATCCACCATGCCATTTT
LOC_Os07g16040
Os.26453.1.S1_at--680--10751Chr07:9356050..9356074 (25 bp)
TTGAACGCGCCTCTATCCATATTTG
LOC_Os07g16040
Os.26453.1.S1_at--231--5451Chr07:9356052..9356076 (25 bp)
GAACGCGCCTCTATCCATATTTGAA
LOC_Os07g16040
Os.26453.1.S1_at--1138--1811Chr07:9356054..9356078 (25 bp)
ACGCGCCTCTATCCATATTTGAACT
LOC_Os07g16040
Os.26453.1.S1_at--307--4551Chr07:9356056..9356080 (25 bp)
GCGCCTCTATCCATATTTGAACTTA
LOC_Os07g16040
Os.26453.1.S1_at--684--10131Chr07:9356063..9356087 (25 bp)
TATCCATATTTGAACTTAGCCCGGT
LOC_Os07g16040
Os.26453.1.S1_at--1022--4311Chr07:9356066..9356090 (25 bp)
CCATATTTGAACTTAGCCCGGTCTT
LOC_Os07g16040
Os.26453.1.S1_at--409--231Chr07:9356068..9356092 (25 bp)
ATATTTGAACTTAGCCCGGTCTTCA
NONE
Os.26453.1.S1_at--88--10191Chr07:9356069..9356093 (25 bp)
TATTTGAACTTAGCCCGGTCTTCAA
NONE
Target Sequence 
GAATTTGTGAACTAAGCTCAGGAAATGCGTGGCACAGATGTGCCATTATTATGGATTGATTCAAAAAGATCAAAAATAGG
TTTGTTGTAGTGTCAAAATTGCTTTGCCCCTAGGTGAATAATTGATCATTGAATCGCCTATCCTTGCAAGGATATAATAA
TAAGATGTTGCTCTGTAATTTGTTATGGTACTGATAATTCATCCACCATGCCATTTTGTTNTTATGCTTGAACGCGCCTC
TATCCATATTTGAACTTAGCCCGGTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis