Browse Element(s) Details


Os.26481.1.S1_at

Description gb:AK059345.1
DB_XREF= gi:32969363
TID=Os.26481.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) MCM(minichromosome maintenance )3-associated protein-like (GANP protein-like) (P0503D09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B10, full insert sequence.
FL= gb:AK059345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4516011/11SAC3/GANP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45110OsAffx.13097.1.S1_s_at11/117+26923497..26926570transposon protein, putative, Mutator sub-class
LOC_Os07g45120Os.50355.1.S1_at11/117+26932616..26935660expressed protein
LOC_Os07g45130NANA7+26940386..26940934hypothetical protein
LOC_Os07g45140OsAffx.29532.1.S1_x_at6/117+26945889..26946224hypothetical protein
LOC_Os07g45150OsAffx.28910.1.S1_at11/117+26948105..26948676hypothetical protein
LOC_Os07g45160Os.26481.1.S1_at11/117+26950751..26961029SAC3/GANP family protein, expressed
LOC_Os07g45170OsAffx.28911.2.S1_at11/117+26963537..26965355expressed protein
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26481.1.S1_at--825--6211Chr07:26960439..26960463 (25 bp)
GAGGCGGCACCCATTCTGGAGGATC
LOC_Os07g45160
Os.26481.1.S1_at--852--1811Chr07:26960447..26960471 (25 bp)
ACCCATTCTGGAGGATCGCGGCATG
LOC_Os07g45160
Os.26481.1.S1_at--899--4451Chr07:26960491..26960515 (25 bp)
GCCTCTCCCTAGATGAGATCATCGA
LOC_Os07g45160
Os.26481.1.S1_at--920--1271Chr07:26960515..26960539 (25 bp)
AGATCAGCTGCGATCTCGATGCCGT
LOC_Os07g45160
Os.26481.1.S1_at--1107--3331Chr07:26960582..26960606 (25 bp)
CACCCAGGTTCGCTATGAACCTCAA
LOC_Os07g45160
Os.26481.1.S1_at--287--8851Chr07:26960591..26960615 (25 bp)
TCGCTATGAACCTCAACCACCGGGT
LOC_Os07g45160
Os.26481.1.S1_at--95--4731Chr07:26960637..26960661 (25 bp)
GCTGGTGATGGCGTGCGGATGCCGA
LOC_Os07g45160
Os.26481.1.S1_at--984--4071Chr07:26960659..26960683 (25 bp)
CGAGAAGGACGGAGCTTAGAGATTT
LOC_Os07g45160
Os.26481.1.S1_at--992--5911Chr07:26960670..26960694 (25 bp)
GAGCTTAGAGATTTGGTGCCCATTG
LOC_Os07g45160
Os.26481.1.S1_at--692--9151Chr07:26960686..26960710 (25 bp)
TGCCCATTGAGAGGGATGACAAGCT
LOC_Os07g45160
Os.26481.1.S1_at--311--2211Chr07:26960704..26960728 (25 bp)
ACAAGCTTGCGAGGCTACTGGAGCA
LOC_Os07g45160
Target Sequence 
GAGGCGGCACCCATTCTGGAGGATCGCGGCATGGCGCCTTCCGTGTCGTCCCGCCTCTCCCTAGATGAGATCATCGAGAT
CAGCTGCGATCTCGATGCCGTCAGCGCCCTGCCACCGGCGAAACCGTTGCCACCCCAACCGCCCACCCAGGTTCGCTATG
AACCTCAACCACCGGGTGGGGTGAACGGTGTGCTTGGAGCTGGTGATGGCGTGCGGATGCCGAGAAGGACGGAGCTTAGA
GATTTGGTGCCCATTGAGAGGGATGACAAGCTTGCGAGGCTACTGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis