Browse Element(s) Details


Os.26492.1.S1_at

Description gb:AK060407.1
DB_XREF= gi:32970425
TID=Os.26492.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 1,3-beta-glucan synthase (P0007F06.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D06, full insert sequence.
FL= gb:AK060407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4820010/11glycosyl transferase family 48 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48170NANA1+27908996..27909977Homeobox domain containing protein
LOC_Os01g48180Os.15936.2.S1_x_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48180Os.15936.1.S1_at11/111+27914225..27925679DDT domain containing protein, expressed
LOC_Os01g48190Os.10606.1.S1_a_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48190Os.10606.3.S1_x_at11/111+27928335..27931766Drought induced 19 protein containing protein, expressed
LOC_Os01g48200Os.26492.1.S1_at10/111+27932819..27935524glycosyl transferase family 48 protein, putative, expressed
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48220Os.6738.1.S1_at11/111+27957871..27960305expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006075biological_processbeta-1,3 glucan biosynthesis
GO:0009556biological_processmicrosporogenesis
GO:0009620biological_processresponse to fungi
GO:0009860biological_processpollen tube growth
GO:0009863biological_processsalicylic acid mediated signaling pathway
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0009965biological_processleaf morphogenesis
GO:0010208biological_processpollen wall formation
GO:0000148cellular_component1,3-beta-glucan synthase complex
GO:0009504cellular_componentcell plate
GO:0003843molecular_function1,3-beta-glucan synthase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26492.1.S1_at--334--2871Chr01:27934218..27934242 (25 bp)
AAGTGTGGTTACTTTGGCACGCCTA
LOC_Os01g48200
Os.26492.1.S1_at--765--851Chr01:27934166..27934190 (25 bp)
ATGGCACCAGTAGCTGTGTTGTCAT
LOC_Os01g48200
Os.26492.1.S1_at--519--5771Chr01:27934116..27934140 (25 bp)
GACGAGGATCCTGTTCAATGAAGCA
LOC_Os01g48200
Os.26492.1.S1_at--651--1611Chr01:27933279..27933303 (25 bp)
AGCTGGATTCATCTTCCTTTTCTGA
LOC_Os01g48200
Os.26492.1.S1_at--413--10311Chr01:27933261..27933285 (25 bp)
TTTCTGAAAATGACCTGCCTTGATG
LOC_Os01g48200
Os.26492.1.S1_at--157--7871Chr01:27933237..27933261 (25 bp)
GGTATTCTATTGGAACGCTGCCCTT
LOC_Os01g48200
Os.26492.1.S1_at--700--6711Chr01:27933124..27933148 (25 bp)
GTTCATACAGGCTTCCCAGTTTAGA
LOC_Os01g48200
Os.26492.1.S1_at--492--7031Chr01:27933078..27933102 (25 bp)
GTACAGGACTCTTTATCTTGATTCT
LOC_Os01g48200
Os.26492.1.S1_at--1036--7531Chr01:27932870..27932894 (25 bp)
GTGGCTGCCCTTTTTGTTGTAAAGT
LOC_Os01g48200
Os.26492.1.S1_at--110--10211NONE
TATTTGCTGTTTGCGCATACCTGCA
NONE
Os.26492.1.S1_at--735--311Chr01:27932825..27932849 (25 bp)
ATACCTGCACATACACCTTCATTGT
LOC_Os01g48200
Target Sequence 
AAGTGTGGTTACTTTGGCACGCCTATATGATATAATGTTTGGAGTAATTGTTATGGCACCAGTAGCTGTGTTGTCATGGC
TGCCTGGACTCCAGGAGATGCAGACGAGGATCCTGTTCAATGAAGCATTTAGTAGGGGACTACATATTTCCCAAATCATT
ACTGGAAAAAAATCACATGGAGTTTGAGCTGGATTCATCTTCCTTTTCTGAAAATGACCTGCCTTGATGGTATTCTATTG
GAACGCTGCCCTTCTCAAGGTTCATACAGGCTTCCCAGTTTAGATTAGATGGATGCTAGTTCTATGTACAGGACTCTTTA
TCTTGATTCTTCTTAACTCAATTTACACATGGATTTCTATGGTAGAGATGATACAGTCGATCGAATGGGTTGTCAATTTG
GTTTATATTCATGGTTCGAGATTTGGTAGCTTATTAGAAATTTTGTAGCGAAACAGAGCTGTACAAACTTTATCGTGAAT
GCACCTGCTTATGCCGTGCGTANNTCTCTTGAGGTGGCTGCCCTTTTTGTTGTAAAGTTTATTATTTGCTGTTTGCGCAT
ACCTGCACATACACCTTCATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis