Browse Element(s) Details


Os.26556.1.S2_at

Description gb:AK065064.1
DB_XREF= gi:32975082
TID=Os.26556.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26556 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001J19, full insert sequence.
FL= gb:AK066418.1 gb:AK065064.1 gb:AK062131.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4231011/11kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42284NANA12+26260271..26261077hypothetical protein
LOC_Os12g42290OsAffx.32154.1.S1_at11/1112+26264717..26265314hypothetical protein
LOC_Os12g42300Os.27610.1.S1_at6/1112+26266327..26272534Potassium transporter, putative, expressed
LOC_Os12g42310Os.26556.1.S2_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42310Os.26556.1.S1_at11/1112+26273263..26282197kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os12g42319OsAffx.9066.1.S1_x_at1/1112+26284523..26285551NA
LOC_Os12g42319Os.48426.1.A1_at1/1112+26284523..26285551NA
LOC_Os12g42330OsAffx.20088.1.S1_at11/1112+26286339..26288393hypothetical protein
LOC_Os12g42340OsAffx.32155.1.S1_x_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42340OsAffx.32155.1.S1_at11/1112+26289786..26293447F-box domain containing protein
LOC_Os12g42360NANA12+26297004..26297426hypothetical protein
LOC_Os12g42370Os.10057.1.S1_at11/1112+26300655..26304551expressed protein
LOC_Os12g42370Os.7867.1.S1_x_at1/1112+26300655..26304551expressed protein
LOC_Os12g42380Os.9126.1.S2_at6/1112+26305856..26308219expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0000164cellular_componentprotein phosphatase type 1 complex
GO:0000163molecular_functionprotein phosphatase type 1 activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26556.1.S2_at--1053--2771Chr12:26273829..26273853 (25 bp)
AAGAGACGTGCTAGCCCACAACAAT
LOC_Os12g42310
Os.26556.1.S2_at--1143--71Chr12:26273806..26273830 (25 bp)
ATTGCCAACTTGGAGGTCGTTTGCA
LOC_Os12g42310
Os.26556.1.S2_at--73--2091Chr12:26273678..26273702 (25 bp)
ACATATTCTTGGTCGTTCATCGGAA
LOC_Os12g42310
Os.26556.1.S2_at--143--10551Chr12:26273663..26273687 (25 bp)
TTCATCGGAAGATCCTACCTGCGAG
LOC_Os12g42310
Os.26556.1.S2_at--360--10651Chr12:26273636..26273660 (25 bp)
TTCGCCCCTGTATATACTCAGATGA
LOC_Os12g42310
Os.26556.1.S2_at--297--1311Chr12:26273617..26273641 (25 bp)
AGATGATGCCCCAGCGGATAGGTGA
LOC_Os12g42310
Os.26556.1.S2_at--802--7431Chr12:26273587..26273611 (25 bp)
GTGTATGTGTTTTGGTCAACCGATT
LOC_Os12g42310
Os.26556.1.S2_at--1133--6991Chr12:26273526..26273550 (25 bp)
GTACTAGGTATTCTTTTCCTGTGTC
LOC_Os12g42310
Os.26556.1.S2_at--227--6651Chr12:26273426..26273450 (25 bp)
GTTGTTGTATAATAGCTGTCTCACC
LOC_Os12g42310
Os.26556.1.S2_at--563--3371Chr12:26273405..26273429 (25 bp)
CACCTATTTGTGTTATCACGCCTTC
LOC_Os12g42310
Os.26556.1.S2_at--726--8731Chr12:26273372..26273396 (25 bp)
TGTAATACTACCTGTCTCTGGTGCT
LOC_Os12g42310
Target Sequence 
AAGAGACGTGCTAGCCCACAACAATTGCCAACTTGGAGGTCGTTTGCAGAGGAGAGCTAAGCTACAGAAAGAACCAAGGG
TGGAGAAACTTCGCCAATCACCACCGACAGCGCTCTCCAATTTCTTTTCCCAAATCATGAGAAGTAAATGAACATATTCT
TGGTCGTTCATCGGAAGATCCTACCTGCGAGGCTTCGCCCCTGTATATACTCAGATGATGCCCCAGCGGATAGGTGAGTG
GGGTGTATGTGTTTTGGTCAACCGATTTGAGGAACAGAAGGGATAGTGTAACTAGTGGTTATTGTACTAGGTATTCTTTT
CCTGTGTCTAGATTTTGTTTTTACCATGTTGGAAAAGTATTGGAGTGGCCAAAGGAGTAAACTTATTGGATGGGGTCCAT
CTAGTTGTTGTATAATAGCTGTCTCACCTATTTGTGTTATCACGCCTTCCTCCCATTTGTAATACTACCTGTCTCTGGTG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26556.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis