Browse Element(s) Details


Os.26708.1.S1_at

Description gb:AK066025.1
DB_XREF= gi:32976043
TID=Os.26708.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26708 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013044E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044E03, full insert sequence.
FL= gb:AK066025.1 gb:AK063456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3013011/11P-type R2R3 Myb protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30100Os.7160.1.S1_at11/117+17742340..17753618Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g30110Os.52110.1.S1_at11/117+17765848..17769687expressed protein
LOC_Os07g30120Os.27433.1.S1_at9/117+17770977..17774813hypothetical protein
LOC_Os07g30130Os.26708.1.S1_at11/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30130Os.53383.1.S1_x_at6/117+17775849..17778810P-type R2R3 Myb protein, putative, expressed
LOC_Os07g30150OsAffx.28670.2.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28670.1.S1_s_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150Os.16899.1.S1_at11/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28669.1.S1_at10/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30150OsAffx.28910.1.S1_at1/117+17786140..17799533Adenine phosphoribosyltransferase 1, putative, expressed
LOC_Os07g30154Os.51032.1.S1_at11/117+17803718..17804277expressed protein
LOC_Os07g30154Os.8638.1.S1_s_at2/117+17803718..17804277expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009416biological_processresponse to light stimulus
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010118biological_processstomatal movement
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26708.1.S1_at--162--9192Chr07:17778404..17778428 (25 bp)
TGCCGGCCCTGTTATTTACATTATG
LOC_Os07g30130
Os.26708.1.S1_at--937--3852Chr07:17778665..17778689 (25 bp)
CTGATCTTATCCTGGGATGTACCTG
LOC_Os07g30130
Os.26708.1.S1_at--972--9271Chr07:17778674..17778698 (25 bp)
TCCTGGGATGTACCTGAACTTAATA
LOC_Os07g30130
Os.26708.1.S1_at--200--5472Chr07:17778689..17778713 (25 bp)
GAACTTAATATTCTCGGTTGTACCG
LOC_Os07g30130
Os.26708.1.S1_at--766--9432Chr07:17778702..17778726 (25 bp)
TCGGTTGTACCGGTTCATTTCTGAG
LOC_Os07g30130
Os.26708.1.S1_at--141--6993Chr07:17778708..17778732 (25 bp)
GTACCGGTTCATTTCTGAGTTCATT
LOC_Os07g30130
Os.26708.1.S1_at--102--6753Chr07:17778714..17778738 (25 bp)
GTTCATTTCTGAGTTCATTCCCTGA
LOC_Os07g30130
Os.26708.1.S1_at--155--6073Chr07:17778724..17778748 (25 bp)
GAGTTCATTCCCTGAACTTGTTGAC
LOC_Os07g30130
Os.26708.1.S1_at--389--5492Chr07:17778737..17778761 (25 bp)
GAACTTGTTGACTAATTTCAATCTG
LOC_Os07g30130
Os.26708.1.S1_at--267--3131Chr07:17778750..17778774 (25 bp)
AATTTCAATCTGTGATGTGGCTCAA
LOC_Os07g30130
Os.26708.1.S1_at--1118--6253Chr07:17778763..17778787 (25 bp)
GATGTGGCTCAATTTTTTAATATAT
LOC_Os07g30130
Target Sequence 
TGCCGGCCCTGTTATTTACATTATGCATTGGACTATTGAGCCTGGTTGTTTTTGGAGGACCAGGGAGCATGGCTGGAGTA
TCNATCTAGAGGATAACCTGATGTGGATTATGCACTTGGCTTTGTCTTGACAAATAATATATGCGGTATTGCTTGTAAGA
GAGGTCTTGTTTTCTGATCTTATCCTGGATTGTATTAAGGACAATTCATGTGGATTAAGGAGAATTCAGAAACAAAATTT
GGAACATTTGCTATAGTATTTTCTGATCTTATCCTGGGATGTACCTGAACTTAATATTCTCGGTTGTACCGGTTCATTTC
TGAGTTCATTCCCTGAACTTGTTGACTAATTTCAATCTGTGATGTGGCTCAATTTTTTAATATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis