Browse Element(s) Details


Os.26733.2.S1_x_at

Description gb:AK103842.1
DB_XREF= gi:32989051
TID=Os.26733.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative membrane protein (OSJNBa0073D04.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148J07, full insert sequence.
FL= gb:AK103842.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1559011/11hypothetical protein
LOC_Os10g2927411/11expressed protein
LOC_Os02g541504/11SacI homology domain containing protein, expressed
LOC_Os10g102801/11hypothetical protein
LOC_Os10g407901/11expressed protein
LOC_Os07g239301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein
LOC_Os08g15570NANA8+9457660..9463755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15580OsAffx.21897.5.S1_x_at4/118+9464072..9467011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15590Os.46319.1.S1_s_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.2.S1_x_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.2.S1_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.1.S1_at4/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.3.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.52575.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.9743.2.S1_x_at2/118+9469276..9474723hypothetical protein
LOC_Os08g15600Os.26733.3.S1_x_at1/118+9475529..9475939Stomatin-like protein 2, putative
LOC_Os08g15610OsAffx.29220.1.S1_at11/118+9478018..9478773hypothetical protein
LOC_Os08g15620Os.55229.1.S1_s_at1/118+9478887..9479945hypothetical protein
LOC_Os08g15630NANA8+9486898..9487758hypothetical protein
LOC_Os08g15639NANA8+9494397..9495652NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26733.2.S1_x_at--211--8973Chr10:14901204..14901228 (25 bp)
TGAAAGCAACACATCCATATCTGGA
LOC_Os10g29274
Os.26733.2.S1_x_at--413--7493Chr02:33190855..33190879 (25 bp)
GTGGGTCACAATTTCCAGTGTTGGA
LOC_Os02g54150
Os.26733.2.S1_x_at--685--2892Chr10:14900904..14900927 (24 bp)
AAGGTATACTCCCATGGTACCTCAG
LOC_Os10g29274
Os.26733.2.S1_x_at--136--7852Chr10:14900889..14900913 (25 bp)
GGTACCTCAGATACATCATGTTCTA
LOC_Os10g29274
Os.26733.2.S1_x_at--876--7755Chr10:21585282..21585306 (25 bp)
GGTGATTCAAACTTTCTGGATCTTG
LOC_Os10g40790
Os.26733.2.S1_x_at--281--6432Chr10:14900816..14900840 (25 bp)
GATCTTGAATGGCTTTCAGCTTCAG
LOC_Os10g29274
Os.26733.2.S1_x_at--1097--1034Chr02:33191894..33191918 (25 bp)
AGGTCCATTGCAATTAGTACTCCAG
LOC_Os02g54150
Os.26733.2.S1_x_at--845--1173Chr02:33191909..33191933 (25 bp)
AGTACTCCAGATGTGAACCTTTCAG
LOC_Os02g54150
Os.26733.2.S1_x_at--494--3395Chr10:21585818..21585842 (25 bp)
CAGCGGAGAATGTTATTGCCACAAT
NONE
Os.26733.2.S1_x_at--768--4394Chr10:21585835..21585859 (25 bp)
GCCACAATGTCTTCTTTTGACTGGT
NONE
Os.26733.2.S1_x_at--1080--6633Chr10:14900248..14900272 (25 bp)
GTTGTACCATCACCATGGACACATT
LOC_Os10g29274
Target Sequence 
TGAAAGCAACACATCCATATCTGGATGTAGTGGTTGCCATAATGGAGACAAGGAGCTGTTGAATGCAGTATTGCTTGATG
TTAAAAGTGGGTCACAATTTCCAGTGTTGGAATCTAATTCAGTACATGGCAATGAAATTTCATTGACCTCTGAAAGTGAG
GTATCAAACTTAAGGTATACTCCCATGGTACCTCAGATACATCATGTTCTAGGTGTTGAAACTGAAAGTTGCATTCATTC
TGGTGATTCAAACTTTCTGGATCTTGAATGGCTTTCAGCTTCAGGCAACTCAAGCGATGAAAGGTCCATTGCAATTAGTA
CTCCAGATGTGAACCTTTCAGCGGAGAATGTTATTGCCACAATGTCTTCTTTTGACTGGTAGATTTGTATGATCAAATAT
AGTTGTACCATCACCATGGACACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26733.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis