Browse Element(s) Details


Os.26742.1.S1_at

Description gb:AK111574.1
DB_XREF= gi:37988237
TID=Os.26742.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26742 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074D22, full insert sequence.
FL= gb:AK111574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0266011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02660Os.26742.1.S1_at11/1111+850566..854102hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02680NANA11+864498..864962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02690OsAffx.18640.1.S1_at11/1111+866517..867556hypothetical protein
LOC_Os11g02690OsAffx.29326.1.S1_at1/1111+866517..867556hypothetical protein
LOC_Os11g02700NANA11+870808..874513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g02710Os.47955.2.S1_x_at6/1111+875097..878084Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26742.1.S1_at--797--9391Chr11:853706..853730 (25 bp)
TCGTCTCTGTTGTGGAAAGGTTCCT
LOC_Os11g02660
Os.26742.1.S1_at--176--1551Chr11:853737..853761 (25 bp)
AGCTTTTGGAAGACCCAGCGAGCAA
LOC_Os11g02660
Os.26742.1.S1_at--263--5551Chr11:853764..853788 (25 bp)
GAAACTGTTCCAAGCAGCTGCATGA
LOC_Os11g02660
Os.26742.1.S1_at--330--3851Chr11:853781..853805 (25 bp)
CTGCATGACACTACTACCTGCAGAT
LOC_Os11g02660
Os.26742.1.S1_at--563--7391Chr11:853902..853926 (25 bp)
GTGATGAACTCATCGGGTTGCCTTC
LOC_Os11g02660
Os.26742.1.S1_at--477--7911Chr11:853917..853941 (25 bp)
GGTTGCCTTCTTCTTTTCCTCATTT
LOC_Os11g02660
Os.26742.1.S1_at--11--9451Chr11:853943..853967 (25 bp)
TCTGTGAAACTAGAACTCCCCATGG
LOC_Os11g02660
Os.26742.1.S1_at--571--4211Chr11:853960..853984 (25 bp)
CCCCATGGTGTTTTCAGAACAGCTG
LOC_Os11g02660
Os.26742.1.S1_at--991--5491Chr11:853976..854000 (25 bp)
GAACAGCTGTATCTGTCACCTTCAT
LOC_Os11g02660
Os.26742.1.S1_at--204--7111Chr11:853990..854014 (25 bp)
GTCACCTTCATCTTTTGTTTAGTCT
LOC_Os11g02660
Os.26742.1.S1_at--715--8771Chr11:854005..854029 (25 bp)
TGTTTAGTCTTTGGGACTTCCACCG
LOC_Os11g02660
Target Sequence 
TCGTCTCTGTTGTGGAAAGGTTCCTAAGAAAAGCTTTTGGAAGACCCAGCGAGCAAGAGAAACTGTTCCAAGCAGCTGCA
TGACACTACTACCTGCAGATCCAGATGAGAGTTAAGACTTAAAAATTGACAGATACAAGAGTGGATTGAGTGAAGAGAAA
ACTAATAGATAGTGTATATATATAGGAAAATATATAGTGATGAACTCATCGGGTTGCCTTCTTCTTTTCCTCATTTTTCT
GTGAAACTAGAACTCCCCATGGTGTTTTCAGAACAGCTGTATCTGTCACCTTCATCTTTTGTTTAGTCTTTGGGACTTCC
ACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis