Browse Element(s) Details


Os.26753.1.S1_at

Description gb:AK072205.1
DB_XREF= gi:32982228
TID=Os.26753.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome5, At5g22790 (P0523A04.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168D12, full insert sequence.
FL= gb:AK098977.1 gb:AK072205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1359011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13550OsAffx.28431.1.S1_s_at11/117+7761734..7766059hypothetical protein
LOC_Os07g13550OsAffx.28431.2.S1_at6/117+7761734..7766059hypothetical protein
LOC_Os07g13560OsAffx.25367.1.S1_at2/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560OsAffx.13241.1.S1_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13560Os.51887.1.S1_x_at1/117+7771310..7777719retrotransposon protein, putative, unclassified
LOC_Os07g13570OsAffx.16246.1.S1_at11/117+7783891..7784409hypothetical protein
LOC_Os07g13580Os.24085.1.S1_x_at11/117+7785085..7787103Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os07g13590Os.26753.1.S1_at11/117+7788517..7793327expressed protein
LOC_Os07g13600Os.21424.1.S1_at8/117+7794294..7795285expressed protein
LOC_Os07g13600OsAffx.9136.1.S1_x_at1/117+7794294..7795285expressed protein
LOC_Os07g13610OsAffx.19542.3.S1_x_at3/117+7806884..7810792retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g13634Os.31358.1.S1_at11/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g13634Os.28943.1.S1_x_at1/117+7813746..7830553UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26753.1.S1_at--269--1311Chr07:7791536..7791560 (25 bp)
AGATGATGATGTACCTGTCCCACCT
LOC_Os07g13590
Os.26753.1.S1_at--318--7331Chr07:7792624..7792648 (25 bp)
GTGCATTCCTTGGTGTGTCTTCCAA
LOC_Os07g13590
Os.26753.1.S1_at--358--3631Chr07:7792642..7792666 (25 bp)
CTTCCAACACCCGTTATCAGATTAT
LOC_Os07g13590
Os.26753.1.S1_at--1159--8911Chr07:7792676..7792700 (25 bp)
TGAGCGTGTGGTTGAGGCTTCACCT
LOC_Os07g13590
Os.26753.1.S1_at--311--9691Chr07:7792735..7792759 (25 bp)
TCACTGTCGGTGTGCGCTTTGCAAA
LOC_Os07g13590
Os.26753.1.S1_at--1011--1631Chr07:7793028..7793052 (25 bp)
AGCGATGTGGAGTGTTGCCAGCCAT
LOC_Os07g13590
Os.26753.1.S1_at--981--4391Chr07:7793044..7793068 (25 bp)
GCCAGCCATAGACTCCCAAAATTTG
LOC_Os07g13590
Os.26753.1.S1_at--1093--5191Chr07:7793071..7793095 (25 bp)
GAATTTGCTCCGTCTCTATTTAAAG
LOC_Os07g13590
Os.26753.1.S1_at--378--4991Chr07:7793205..7793229 (25 bp)
GCATGTCATAGTGCTTAGCCTTCCA
LOC_Os07g13590
Os.26753.1.S1_at--579--9991Chr07:7793220..7793244 (25 bp)
TAGCCTTCCATATGCGCAAATCAGT
LOC_Os07g13590
Os.26753.1.S1_at--355--9731Chr07:7793302..7793326 (25 bp)
TAAATTCGGTCATCTTGGTTTGGGC
LOC_Os07g13590
Target Sequence 
AGATGATGATGTACCTGTCCCACCTCTGCTCAAAACTTCTGCATTGTGGGGTGCATTCCTTGGTGTGTCTTCCAACACCC
GTTATCAGATTATTAATGGGCTTGAGCGTGTGGTTGAGGCTTCACCTGTTGCCAAGCGTGTCCCAGCTGTTTCTCTGGCA
TTCACTGTCGGTGTGCGCTTTGCAAATAACATTTATGGAGGAATGCAGTTTGTGGACTGGGCTAGAATGACCGGTTGTCA
ATGAGGTGAAGGCATTCTTATTTTCATGTTATCATTCACAGCGATGTGGAGTGTTGCCAGCCATAGACTCCCAAAATTTG
TCGAATTTGCTCCGTCTCTATTTAAAGATGTGATGCTATTACCAATAATTGCATTGCTGCAGAGCTCCAAAATAAATGAG
GTCGTATGTTCTGTTTAGAATGCAACAGGATTCATTGTAAAATCAGGAAAGTTTCAGCATGTCATAGTGCTTAGCCTTCC
ATATGCGCAAATCAGTAGCTCCAAGATTTAGAAGATTGGATGTATATTGAATTCGGTTGTTTCTCTTGTNGAATAAATTC
GGTCATCTTGGTTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis