Browse Element(s) Details


Os.2678.1.S1_at

Description gb:D17443.1
DB_XREF= gi:440868
GEN=YK347
TID=Os.2678.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2678 (NCBI UniGene Cluster)
DEF=Rice mRNA for major intrinsic protein, complete cds.
PROD=major intrinsic protein
FL= gb:D17443.1 gb:AK068806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1387011/11Aquaporin NIP1.2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13840Os.11467.1.S1_at10/112+7491241..7497864Citrate synthase, glyoxysomal precursor, putative, expressed
LOC_Os02g13850Os.27983.1.S2_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.27983.1.S1_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.8723.1.S1_at2/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.8413.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.21108.1.S1_x_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.54405.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.16280.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13860OsAffx.2602.2.S1_at11/112+7513963..7514649hypothetical protein
LOC_Os02g13870Os.2678.1.S1_at11/112+7516220..7519336Aquaporin NIP1.2, putative, expressed
LOC_Os02g13880OsAffx.24236.1.S1_at11/112+7524306..7524563expressed protein
LOC_Os02g13890Os.20210.1.S1_at11/112+7542597..7547070zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2678.1.S1_at--267--7651Chr02:7516679..7516703 (25 bp)
GGGAGATCACCAAGAGCGGCTCCTT
LOC_Os02g13870
Os.2678.1.S1_at--56--9991Chr02:7516609..7516633 (25 bp)
TAGCTAACCACCAAGAACCCTAATT
LOC_Os02g13870
Os.2678.1.S1_at--881--9891Chr02:7516566..7516590 (25 bp)
TACTACTGCTACTTTCTGTTCGAGA
LOC_Os02g13870
Os.2678.1.S1_at--630--6031Chr02:7516533..7516557 (25 bp)
GAGATGCTTGATCGATGCACCGCAT
LOC_Os02g13870
Os.2678.1.S1_at--108--5091Chr02:7516517..7516541 (25 bp)
GCACCGCATCGCATTTAAAAGGGAA
LOC_Os02g13870
Os.2678.1.S1_at--2--131Chr02:7516442..7516466 (25 bp)
ATTAGCGTTAGTTCGTTGTCGTCTC
LOC_Os02g13870
Os.2678.1.S1_at--891--8711Chr02:7516426..7516450 (25 bp)
TGTCGTCTCGGCTACGTGCCACAAG
LOC_Os02g13870
Os.2678.1.S1_at--129--2951Chr02:7516405..7516429 (25 bp)
CAAGGCCTCCTTTGTAACGCAGGAA
LOC_Os02g13870
Os.2678.1.S1_at--307--2251Chr02:7516331..7516355 (25 bp)
AAATTCGTGTGGAACTTCTCTGCCT
LOC_Os02g13870
Os.2678.1.S1_at--852--2051Chr02:7516318..7516342 (25 bp)
ACTTCTCTGCCTCCTATATATGTAG
LOC_Os02g13870
Os.2678.1.S1_at--293--3431Chr02:7516229..7516253 (25 bp)
CAGAGTGTTTCCTTGCAGATTATGG
LOC_Os02g13870
Target Sequence 
GGGAGATCACCAAGAGCGGCTCCTTCCTCAAGAGCATGAACCGGATGAACTCCTCCACCTAACCTCTATCTAGCTAACCA
CCAAGAACCCTAATTAATTACTACTGCCAGTACTACTACTGCTACTTTCTGTTCGAGATCGATATCGAGATGCTTGATCG
ATGCACCGCATCGCATTTAAAAGGGAAGAGATGGATGAACTACTATTTGTGACGTACACATATATAGTAGTAATTTAATT
AGCGTTAGTTCGTTGTCGTCTCGGCTACGTGCCACAAGGCCTCCTTTGTAACGCAGGAATTTTATAGGAATTCTGTGATG
TGTGTTTTTAGATGTGGGGATTCCTATAAAATTCGTGTGGAACTTCTCTGCCTCCTATATATGTAGAACTTAAAAAATCT
ATGTATATGTGTGTGTGGAATAGTATGTTTTGGNCCACGTGATAAAATTGCAGAGTGTTTCCTTGCAGATTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis