Browse Element(s) Details


Os.26790.1.S1_at

Description gb:AK100455.1
DB_XREF= gi:32985664
TID=Os.26790.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091E18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091E18, full insert sequence.
FL= gb:AK111729.1 gb:AK100455.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0417011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04110Os.48856.1.S1_at11/118+1988178..1992555Phosphate/phosphoenolpyruvate translocator, putative, expressed
LOC_Os08g04120Os.27253.1.A1_at7/118+1993833..1998883expressed protein
LOC_Os08g04130Os.51918.1.S1_at11/118+2001564..2005270Copine family protein, expressed
LOC_Os08g04140Os.56353.1.S1_at11/118+2005657..2006909Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os08g04150OsAffx.16822.1.S1_at10/118+2006892..2009219expressed protein
LOC_Os08g04160OsAffx.5696.1.S1_at11/118+2011891..2012403hypothetical protein
LOC_Os08g04170Os.32689.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.26790.1.S1_at11/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04170Os.51779.1.S1_at10/118+2012846..2020299Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os08g04180Os.57472.1.S1_x_at11/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04180Os.13900.1.S1_at10/118+2023388..2026836Tryptophan synthase beta chain 2, chloroplast precursor, putative, expressed
LOC_Os08g04190Os.57415.1.S1_x_at11/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190OsAffx.29023.1.S1_x_at10/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04190Os.57416.1.S1_x_at1/118+2028110..2031160START domain containing protein, expressed
LOC_Os08g04200OsAffx.5697.1.S1_at11/118+2036206..2036436hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26790.1.S1_at--767--231Chr08:2019635..2019659 (25 bp)
ATATTTACATGTCCTACTCCAGAGA
LOC_Os08g04170
Os.26790.1.S1_at--454--8711Chr08:2019873..2019897 (25 bp)
TGTCCCCAAGTTTAGGATTCTTCTT
LOC_Os08g04170
Os.26790.1.S1_at--619--111Chr08:2019889..2019913 (25 bp)
ATTCTTCTTTTGTCTTCAAAGCTAG
LOC_Os08g04170
Os.26790.1.S1_at--559--10191Chr08:2019957..2019981 (25 bp)
TATTTTTCCCCTCCCAATTTCAATG
LOC_Os08g04170
Os.26790.1.S1_at--494--5931Chr08:2020125..2020149 (25 bp)
GAGCATAAGCTGAGATACACCCGAT
LOC_Os08g04170
Os.26790.1.S1_at--906--1791Chr08:2020143..2020167 (25 bp)
ACCCGATGGTTGTGTTTGTGCTAAT
LOC_Os08g04170
Os.26790.1.S1_at--550--10831Chr08:2020158..2020182 (25 bp)
TTGTGCTAATCTGTGCTGTCCCTTT
LOC_Os08g04170
Os.26790.1.S1_at--1039--8691Chr08:2020174..2020198 (25 bp)
TGTCCCTTTCAGTGTGCAGCACAAA
LOC_Os08g04170
Os.26790.1.S1_at--1118--7431Chr08:2020205..2020229 (25 bp)
GTGTAAGCTAGCTGCTACTACCAGT
LOC_Os08g04170
Os.26790.1.S1_at--1157--9891Chr08:2020220..2020244 (25 bp)
TACTACCAGTCTATTTTGTCACATG
LOC_Os08g04170
Os.26790.1.S1_at--324--6931Chr08:2020244..2020268 (25 bp)
GTCAGGGACTCAGGGTTAGGAACAT
LOC_Os08g04170
Target Sequence 
ATATTTACATGTCCTACTCCAGAGAAAAGCTAAACAAACTCGTNCAGGCATATGTTGGCAAGTATGCCAAGAAAGATTGA
AGACATGGTGCCNGTTCTTCCTGCATTGTATTAGAAAGATTGAAGCAGCCTTANCTGTCCCCAAGTTTAGGATTCTTCTT
TTGTCTTCAAAGCTAGTTTAGGATCCTGTAATTTAGGGNATTTGATTAAAATCACAAACATATTTTTCCCCTCCCAATTT
CAATGTTCACTATGGTGGTTTGACAGGTAGAGTATTTNGCTGGTAGGGCANCTGAACCAAATGTTACCTCAATGTAACTT
TTGTAGAATATTCATCNGAGTCATGAAGCTTTCTGTATGAGATTGTACAATCTTTGGATCATCTGTATGAGCATAAGCTG
AGATACACCCGATGGTTGTGTTTGTGCTAATCTGTGCTGTCCCTTTCAGTGTGCAGCACAAACAAGAAGTGTAAGCTAGC
TGCTACTACCAGTCTATTTTGTCACATGTCAGGGACTCAGGGTTAGGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis