Browse Element(s) Details


Os.2685.1.S1_at

Description gb:AK059446.1
DB_XREF= gi:32969464
TID=Os.2685.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glycine-rich RNA-binding protein 2 (P0004D12.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-A07, full insert sequence.
FL= gb:AK121668.1 gb:AK059446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g687909/11Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2685.1.S1_at--1056--4871Chr01:40282494..40282518 (25 bp)
GCTTTGTTAGCTTTGCCAATGGCGA
LOC_Os01g68790
Os.2685.1.S1_at--104--5491Chr01:40282873..40282897 (25 bp)
GAACTTCGCGAATGAGAGACCTCCA
LOC_Os01g68790
Os.2685.1.S1_at--126--1791Chr01:40282971..40282995 (25 bp)
ACCGAGGCTATGGAGGGCAGTACTA
LOC_Os01g68790
Os.2685.1.S1_at--519--2871Chr01:40282996..40283020 (25 bp)
AAGTGGGCACTGACTTGCTTAAATA
LOC_Os01g68790
Os.2685.1.S1_at--1090--5911Chr01:40283023..40283047 (25 bp)
GAGCTTAGGACCTGATGTGGCTTAT
LOC_Os01g68790
Os.2685.1.S1_at--913--5791Chr01:40283075..40283099 (25 bp)
TACCGTTTAGTATCCGTCGTCGTTG
LOC_Os01g68790
Os.2685.1.S1_at--86--8431Chr01:40283154..40283178 (25 bp)
GGCCTAGGATGCGAATGGTGCTTTT
LOC_Os01g68790
Os.2685.1.S1_at--1037--7691Chr01:40283235..40283259 (25 bp)
GGGTCATTACTCGAGTGTGTCAGCA
LOC_Os01g68790
Os.2685.1.S1_at--1025--9051Chr01:40283284..40283308 (25 bp)
TGCATCGAGCATTCGTTCACAAGAC
LOC_Os01g68790
Os.2685.1.S1_at--568--5931NONE
GAGCAGCGTCCGTGAACCATTTGAT
NONE
Os.2685.1.S1_at--503--6451NONE
GATCAACGTCATGTGTATTCTCTGC
NONE
Target Sequence 
GCTTTGTTAGCTTTGCCAATGGCGATGATGCCAAGAGTGCCATGGATGCCATGGACGGTAAGGAACTTGAGGGACGGAGT
ATCCGCGTGAACTTCGCGAATGAGAGACCTCCAGGGAACCGAGGTGGCGGCGGGTATGGTGGTGGTGGCGGTGGTTATGG
NAACCAAGGAGGCTATGGTGATGGCAACCGAGGCTATGGAGGGCAGTACTAAAGTGGGCACTGACTTGCTTAAATAATGA
GCTTAGGACCTGATGTGGCTTATGTGAAGCCTTATTATTGTTTACTTTTGTACCGTTTAGTATCCGTCGTCGTTGAAATT
CTAGGTGAAGATTAAATCTTCATATTGCACTTTATATGCTTGGCGTGAAGGCCTAGGATGCGAATGGTGCTTTTTTNGTG
AGTGAGAACTGAGAACACATGCATGTCTTCATATCTATTGCAATGTGTAGAGGGTCATTACTCGAGTGTGTCAGCAAGTC
TTATTATTTCATATTTGATCTGCATCGAGCATTCGTTCACAAGACAAATCGCCTGAGCAGCGTCCGTGAACCATTTGATC
AACGTCATGTGTATTCTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis