Browse Element(s) Details


Os.18887.1.S1_at

Description gb:AK073904.1
DB_XREF= gi:32983927
TID=Os.18887.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18887 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gamma-adaptin 1 (P0004D12.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033072A21, full insert sequence.
FL= gb:AK101112.1 gb:AK073832.1 gb:AK073904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g687509/11Adaptin N terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0030121cellular_componentAP-1 adaptor complex
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18887.1.S1_at--893--6391Chr01:40261558..40262092 (25 bp)
GATCGTCAGCTGTAGATTCCTATCT
LOC_Os01g68750
Os.18887.1.S1_at--1030--3631Chr01:40261515..40261535 (21 bp)
CTTCCTTCTTCGTTTCTGCAGATAA
LOC_Os01g68750
Os.18887.1.S1_at--610--1071NONE
AGGGCTTATGCAATCTCCGCAATTT
NONE
Os.18887.1.S1_at--850--6391NONE
GATCGATATGCTACCCGAGTGCCAA
NONE
Os.18887.1.S1_at--255--5211Chr01:40259956..40259980 (25 bp)
GAATTGTCAGCTTCGCATTCAACAG
LOC_Os01g68750
Os.18887.1.S1_at--910--3571Chr01:40259941..40259965 (25 bp)
CATTCAACAGACTTGCAGCAGCGTG
LOC_Os01g68750
Os.18887.1.S1_at--389--2111Chr01:40259906..40259930 (25 bp)
ACAGGCTTTGCTAGGTTTGGACAAA
LOC_Os01g68750
Os.18887.1.S1_at--400--3031Chr01:40259864..40259888 (25 bp)
AATGCCAGCCGATGCAAGCTGCGAA
LOC_Os01g68750
Os.18887.1.S1_at--1024--8891Chr01:40259599..40259621 (23 bp)
TGAGATCGACAGAAACCTCTCGTTT
LOC_Os01g68750
Os.18887.1.S1_at--742--9031Chr01:40259536..40259560 (25 bp)
TGCACCCTACATTCCTGAGAGTGAA
LOC_Os01g68750
Os.18887.1.S1_at--60--5991Chr01:40259463..40259487 (25 bp)
GAGACATCTGCCCATGCTCTTAGAT
LOC_Os01g68750
Target Sequence 
GATCGTCAGCTGTAGATTCCTATCTACGGATTGTTGGGGAGCCAAAGCTTCCTTCTTCGTTTCTGCAGATAATATGCTGG
GTTTTGGGAGAATATGGAACAGCAGATGGGAAATATTCAGCTTCATATATTATTGGGAAGCTGTATGATGTGGCAGAGGC
CCACCCAACTGATGACACTGTCAGGGCTTATGCAATCTCCGCAATTTTGAAGATCTTTGCGTTTGAAATCGCTCTTGGAA
GGAAGATCGATATGCTACCCGAGTGCCAATCGTTGATAGATGAATTGTCAGCTTCGCATTCAACAGACTTGCAGCAGCGT
GCATATGAGCTACAGGCTTTGCTAGGTTTGGACAAACAGGCTGTTGAGAATGTAATGCCAGCCGATGCAAGCTGCGAAGA
TATTGAGATCGACAGAAACCTCTCGTTTCTAAATGGTTATGTGCAGCAAGCCATTGAAAATGGTGCTGCACCCTACATTC
CTGAGAGTGAACGCTCAGGAGTGGTAAGTGTTGGCAACTACAAGGCCCAGGATCAACAAGAGACATCTGCCCATGCTCTT
AGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis