Browse Element(s) Details


Os.19350.1.S1_at

Description gb:CB621464
DB_XREF= gi:29616452
DB_XREF=OSIIEa07F17.r
CLONE=OSIIEa07F17
TID=Os.19350.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.19350 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:S53363 (H.sapiens) S53363 mucin 5AC
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g687207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0000166molecular_functionnucleotide binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19350.1.S1_at--428--4091NONE
CGACGCCGGTGTACATCAGCGCGGA
NONE
Os.19350.1.S1_at--210--1051Chr01:40246508..40246527 (20 bp)
AGGTGAAGGTCATCTACCACACGCC
LOC_Os01g68720
Os.19350.1.S1_at--249--10851NONE
TTGGCGGCTACATCGATCGTAAGTT
NONE
Os.19350.1.S1_at--1048--6291Chr01:40246281..40246305 (25 bp)
GATGATGACACTCTACTCATGCTCT
LOC_Os01g68720
Os.19350.1.S1_at--486--631Chr01:40246263..40246287 (25 bp)
ATGCTCTCTGTTTTGCTCCATATTA
LOC_Os01g68720
Os.19350.1.S1_at--224--6811Chr01:40246254..40246278 (25 bp)
GTTTTGCTCCATATTATCGTCTCGT
LOC_Os01g68720
Os.19350.1.S1_at--685--151Chr01:40246242..40246266 (25 bp)
ATTATCGTCTCGTCCGTGTGTTCAT
LOC_Os01g68720
Os.19350.1.S1_at--704--8791NONE
TGTTCATCCGCTGCATCTCTGAAAT
NONE
Os.19350.1.S1_at--739--4971NONE
GCATCTCTGAAATCTCTGATAGCTA
NONE
Os.19350.1.S1_at--689--3691Chr01:40246186..40246210 (25 bp)
CTATATGAATGAATGCGTGTGTCCA
LOC_Os01g68720
Os.19350.1.S1_at--5--4031Chr01:40246118..40246139 (22 bp)
CGTCAGTTTAGTTCTTCGATCGGAT
LOC_Os01g68720
Target Sequence 
CGACGCCGGTGTACATCAGCGCGGAGGAGGTGAAGGTCATCTACCACACGCCGCCCGGCTACGGCTCGTCGTCNCAGTAC
GAGAGCGAGGGCGACAGGAGGAGGAGAGNCGGCGGCGGCGGCGGCGCTGGATCAGGAAGCAACGGCGGCGGCGGCGGGTT
NTTCGGCCCGGCGTTCCACGCCGTTGGCGGCTACATCGATCGTAAGTTCGGGTTGGACNAAGACTGATGATGACACTCTA
CTCATGCTCTCTGTTTTGCTCCATATTATCGTCTCGTCCGTGTGTTCATCCGCTGCATCTCTGAAATCTCTGATAGCTAT
GCTATATGAATGAATGCGTGTGTCCANAGTACNAAAATTATCTACAGTTCTACTCAACTTTAATTAGTTCGTCAGTTTAG
TTCTTCGATCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis