Browse Element(s) Details


Os.5763.1.S1_at

Description gb:AK101063.1
DB_XREF= gi:32986272
TID=Os.5763.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) DNA-binding protein-like protein (P0004D12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022O19, full insert sequence.
FL= gb:AK101063.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6870011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5763.1.S1_at--739--9991Chr01:40222200..40222220 (21 bp)
TAGCGATGCGGCTTCTCAGGTTGGT
LOC_Os01g68700
Os.5763.1.S1_at--417--10571Chr01:40222103..40222123 (21 bp)
TTCTCAGGTTGGTGCTTTCTGGCAA
LOC_Os01g68700
Os.5763.1.S1_at--329--7331Chr01:40222092..40222116 (25 bp)
GTGCTTTCTGGCAAGATGATCTCCA
LOC_Os01g68700
Os.5763.1.S1_at--701--6391Chr01:40222075..40222099 (25 bp)
GATCTCCAAAGTGTTGTTCAGATGG
LOC_Os01g68700
Os.5763.1.S1_at--340--2331Chr01:40222041..40222065 (25 bp)
AAAGTCAGGAGATCGCCACCTCTTC
LOC_Os01g68700
Os.5763.1.S1_at--708--511Chr01:40221915..40221939 (25 bp)
ATCGTTGCAAACAGTCCACATGAAA
LOC_Os01g68700
Os.5763.1.S1_at--19--2911Chr01:40221866..40221890 (25 bp)
AAGGTTCGATCCAAAGCTCTGACGC
LOC_Os01g68700
Os.5763.1.S1_at--398--4811Chr01:40221851..40221875 (25 bp)
GCTCTGACGCCCATTGTACATACAG
LOC_Os01g68700
Os.5763.1.S1_at--1122--2571Chr01:40221710..40221734 (25 bp)
AACGCACCATGTACGGTAGTCGGGT
LOC_Os01g68700
Os.5763.1.S1_at--402--9251Chr01:40221529..40221553 (25 bp)
TCCTTCTTCCTGTCCATGGATCGAT
LOC_Os01g68700
Os.5763.1.S1_at--645--7971Chr01:40221512..40221536 (25 bp)
GGATCGATCTCCTTAAGCTGAAATT
LOC_Os01g68700
Target Sequence 
TAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTC
AGGAGATCGCCACCTCTTCCAATAGCTACAATGGNNATCGTTGCAAACAGTCCACATGAAAATGGAGCTTTGACATGACC
AAATAAAGGTTCGATCCAAAGCTCTGACGCCCATTGTACATACAGAGAAGTCAGCTTGCCGCGGCAGCACTCTGAGATTC
AACCCTAANAATGTTGGGCCCTAGCAGTGTTTTAGCTTCTAATTTCCCATCTTGGTGTAATGATTCTTTGAACAAAAATG
AAACGCACCATGTACGGTAGTCGGGTGTAGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGA
TGCTTCATTCAGACCCTTTTACCCTNTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTG
TAGCTGATATATATCTTTAAGATCCTTCTTCCTGTCCATGGATCGATCTCCTTAAGCTGAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis