Browse Element(s) Details


OsAffx.23974.1.S1_at

Description tigr:9629.m06824
TID=OsAffx.23974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6869010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68660Os.42764.1.S1_at10/111+40203307..40204092Cystatin domain containing protein, expressed
LOC_Os01g68670NANA1+40205808..40206254cystatin, putative, expressed
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23974.1.S1_at--829--8911Chr01:40221225..40221249 (25 bp)
TGAGCTGTATGATAAGTACCCAGAG
LOC_Os01g68690
OsAffx.23974.1.S1_at--311--6991Chr01:40221213..40221234 (22 bp)
GTACCCAGAGATAGAGACAGCAATG
LOC_Os01g68690
OsAffx.23974.1.S1_at--20--3231Chr01:40220673..40220697 (25 bp)
CAAGATTACCTGACAGCATCTCCTG
LOC_Os01g68690
OsAffx.23974.1.S1_at--1131--3391Chr01:40220660..40220684 (25 bp)
CAGCATCTCCTGCTGATTTTTTCAG
LOC_Os01g68690
OsAffx.23974.1.S1_at--403--5571Chr01:40220596..40220620 (25 bp)
GAAAGAGACTGCTCTGCAACAAATG
LOC_Os01g68690
OsAffx.23974.1.S1_at--255--3291Chr01:40220577..40220601 (25 bp)
CAAATGAGAAGGTCCCATGGAAAAA
LOC_Os01g68690
OsAffx.23974.1.S1_at--158--5111Chr01:40220544..40220568 (25 bp)
GCAAAGGGTGAAACTGGAACAGTAC
LOC_Os01g68690
OsAffx.23974.1.S1_at--496--8171NONE
GGAACAGTACACATCCATTCACACA
NONE
OsAffx.23974.1.S1_at--440--3311Chr01:40219960..40219982 (23 bp)
CACATCCATTCACACAAGCAATCAA
LOC_Os01g68690
OsAffx.23974.1.S1_at--61--9611Chr01:40219935..40219959 (25 bp)
TCATAAAGCCATGCTTGCGTCTGCT
LOC_Os01g68690
OsAffx.23974.1.S1_at--1139--631Chr01:40219925..40219949 (25 bp)
ATGCTTGCGTCTGCTTGCTGACAAC
LOC_Os01g68690
Target Sequence 
TGAGCTGTATGATAAGTACCCAGAGATAGAGACAGCAATGAAAATTCAAGATTACCTGACAGCATCTCCTGCTGATTTTT
TCAGCACAATAAGTATGGGAATTGACAATGTCATGAGGTACAAGAAAGAGACTGCTCTGCAACAAATGAGAAGGTCCCAT
GGAAAAAAAAGGGGGGCAAAGGGTGAAACTGGAACAGTACACATCCATTCACACAAGCAATCAATCATAAAGCCATGCTT
GCGTCTGCTTGCTGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis