Browse Element(s) Details


Os.7639.1.S1_at

Description gb:AK103859.1
DB_XREF= gi:32989068
TID=Os.7639.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004D12.19 (P0004D12.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033148P20, full insert sequence.
FL= gb:AK103859.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6871011/11FK506-binding protein 2-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68680OsAffx.2439.1.S1_at11/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68680Os.45968.1.S1_at10/111+40207864..40217477TPR Domain containing protein, expressed
LOC_Os01g68690OsAffx.23974.1.S1_at10/111+40219839..40221305hypothetical protein
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7639.1.S1_at--659--2451Chr01:40241312..40241336 (25 bp)
AACACTAATCTTTGACACGGAGCTT
LOC_Os01g68710
Os.7639.1.S1_at--305--5911Chr01:40241293..40241317 (25 bp)
GAGCTTATCGCCGTCAATGGAAAGA
LOC_Os01g68710
Os.7639.1.S1_at--757--9511Chr01:40241241..40241265 (25 bp)
TCTAAGGTCGTCTTTGATGTTCCAC
LOC_Os01g68710
Os.7639.1.S1_at--851--6271Chr01:40241226..40241250 (25 bp)
GATGTTCCACACAACGAAGAGTTAG
LOC_Os01g68710
Os.7639.1.S1_at--977--6731Chr01:40241122..40241146 (25 bp)
GTTCATCGTGTTACTTCGAAGTTCA
LOC_Os01g68710
Os.7639.1.S1_at--63--7051Chr01:40241067..40241091 (25 bp)
GTACAATTTTTTCATGTCCTCTGAA
LOC_Os01g68710
Os.7639.1.S1_at--330--9311Chr01:40241035..40241059 (25 bp)
TCCCCTGATGGGACAGAATCTGAAA
LOC_Os01g68710
Os.7639.1.S1_at--682--2271Chr01:40241011..40241035 (25 bp)
AAATCTGCCTTGTCGCAATGGTCTT
LOC_Os01g68710
Os.7639.1.S1_at--225--7231Chr01:40241000..40241024 (25 bp)
GTCGCAATGGTCTTGGAGTCTTCAA
LOC_Os01g68710
Os.7639.1.S1_at--486--6091Chr01:40240985..40241009 (25 bp)
GAGTCTTCAACGTATTTGCACTGCA
LOC_Os01g68710
Os.7639.1.S1_at--987--1271Chr01:40240949..40240973 (25 bp)
AGATCATCAGATCCTCGGGTGAAAT
LOC_Os01g68710
Target Sequence 
AACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGACAACCGGTGGTGCTAGCAATAGTGAGCTCTAAGGTC
GTCTTTGATGTTCCACACAACGAAGAGTTAGCTTGTGTAGCGCCTCCTCAAAACAGCGGTTCAGTGGTCCTTTTAAGAGT
TCAGTCAAAAAAGGATGCTGTTTCCTTCATGTTCATCGTGTTACTTCGAAGTTCAAAGTATTGTTCAANCCATCCTTAAT
TTATGGTACAATTTTTTCATGTCCTCTGAACTTTTTTTCCCCTGATGGGACAGAATCTGAAAAATCTGCCTTGTCGCAAT
GGTCTTGGAGTCTTCAACGTATTTGCACTGCAGCTGTTAGCAAAGATCATCAGATCCTCGGGTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis