Browse Element(s) Details


Os.7281.1.S1_at

Description gb:AK106300.1
DB_XREF= gi:32991509
TID=Os.7281.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004D12.21 (P0004D12.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C04, full insert sequence.
FL= gb:AK106300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6873011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68700Os.5763.1.S1_at11/111+40221495..40224582Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7281.1.S1_at--842--6711Chr01:40249605..40249629 (25 bp)
GTTCGGATTCGACTGAGCCTGATAG
LOC_Os01g68730
Os.7281.1.S1_at--345--3151Chr01:40249564..40249588 (25 bp)
AATTCAATTCGTCGATGTCTCCTCT
LOC_Os01g68730
Os.7281.1.S1_at--98--9371Chr01:40249523..40249547 (25 bp)
TCGACTCCATCGATATCTACTGCAA
LOC_Os01g68730
Os.7281.1.S1_at--1009--111Chr01:40249441..40249465 (25 bp)
ATTCTACAAGCGTTCGTTGGTTCAG
LOC_Os01g68730
Os.7281.1.S1_at--2--9831Chr01:40249300..40249324 (25 bp)
TAAACCAGTAGTACCGGCTTTCCTG
LOC_Os01g68730
Os.7281.1.S1_at--1042--9851Chr01:40249234..40249258 (25 bp)
TACACATGTGGGTAGCTAGCTAGCT
LOC_Os01g68730
Os.7281.1.S1_at--294--7011Chr01:40249190..40249214 (25 bp)
GTACTAGCCGGAGACTGTTTTTTGT
LOC_Os01g68730
Os.7281.1.S1_at--547--10251Chr01:40249170..40249194 (25 bp)
TTTGTGTTGTACTCTAGCTATCTGT
LOC_Os01g68730
Os.7281.1.S1_at--32--10131Chr01:40249135..40249159 (25 bp)
TATGTTCAGTGTGCTGCTGGCTAGC
LOC_Os01g68730
Os.7281.1.S1_at--435--8311Chr01:40249117..40249141 (25 bp)
GGCTAGCTACTCAATATGCTTCCAT
LOC_Os01g68730
Os.7281.1.S1_at--238--7071Chr01:40249079..40249103 (25 bp)
GTAAGTGTTTCTTCTGTTCATACAT
LOC_Os01g68730
Target Sequence 
GTTCGGATTCGACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGTTCTGCATCTC
GATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTAC
TCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAA
TTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACC
GGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTA
TTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGT
GTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTNCTGTATTTAGTAAGTGTTTCTTCTGTTCATACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis