Browse Element(s) Details


Os.25007.1.S2_a_at

Description gb:AK121061.1
DB_XREF= gi:37990684
TID=Os.25007.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004D12.25 (P0004D12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058E11, full insert sequence.
FL= gb:AK103107.1 gb:AK121061.1 gb:AK121997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6876011/11WW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25007.1.S2_a_at--76--5051Chr01:40266142..40266166 (25 bp)
GCAGAGGTTGCATCTCATGGCAAGA
LOC_Os01g68760
Os.25007.1.S2_a_at--63--5551Chr01:40266119..40266143 (25 bp)
GAAACGTGGTATGGCTCCGATCACC
LOC_Os01g68760
Os.25007.1.S2_a_at--389--7211Chr01:40266045..40266069 (25 bp)
GTCGTAAATTTTCCTTGCAACCCAG
LOC_Os01g68760
Os.25007.1.S2_a_at--750--9011Chr01:40266030..40266054 (25 bp)
TGCAACCCAGTGGACTAGCGGTCAT
LOC_Os01g68760
Os.25007.1.S2_a_at--162--10011Chr01:40266015..40266039 (25 bp)
TAGCGGTCATTTTGGCTTTGGCAAT
LOC_Os01g68760
Os.25007.1.S2_a_at--733--491Chr01:40265981..40266005 (25 bp)
ATCGGTGCACTGTCGTCCAAAAAGA
LOC_Os01g68760
Os.25007.1.S2_a_at--239--7111Chr01:40265948..40265972 (25 bp)
GTCAGCAGTAAATCACTCCAGTGCA
LOC_Os01g68760
Os.25007.1.S2_a_at--676--5971Chr01:40265922..40265946 (25 bp)
GAGAACCCAGAGCTGAGTGCATTGT
LOC_Os01g68760
Os.25007.1.S2_a_at--1098--1111Chr01:40265907..40265931 (25 bp)
AGTGCATTGTGAGACTGAGCTTAAT
LOC_Os01g68760
Os.25007.1.S2_a_at--817--7291Chr01:40265864..40265888 (25 bp)
GTGCCCATGGTGTAATTCTCGTGAA
LOC_Os01g68760
Os.25007.1.S2_a_at--669--4051Chr01:40265693..40265717 (25 bp)
CGACCTGTTAATGCTACCATCTTAA
LOC_Os01g68760
Target Sequence 
GCAGAGGTTGCATCTCATGGCAAGAAACGTGGTATGGCTCCGATCACCAAAAGAGGGGATGGCAGTGACGGTCTCGGGGA
GGCGGATTAGATCAATCGTCGTAAATTTTCCTTGCAACCCAGTGGACTAGCGGTCATTTTGGCTTTGGCAATGACTGAAA
CATCGGTGCACTGTCGTCCAAAAAGAAGCAAACTGTCAGCAGTAAATCACTCCAGTGCAGGAGAACCCAGAGCTGAGTGC
ATTGTGAGACTGAGCTTAATAAGATTCACATCCTAAATGTGCCCATGGTGTAATTCTCGTGAAATCTGCAGAAGTTTTCG
GTGTAAATTTTTGACAGGGTGAAAGAATTCGCAACAGGAATAGTGATGTAGAGCTAATGTGTAATTTTTGGTATTAACCG
AAACAGTTCTGTTGAATACTAGAATCTAGGGGTTGTTTTATGGATAATACGACCTGTTAATGCTACCATCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25007.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis