Browse Element(s) Details


OsAffx.23976.1.S1_at

Description gb:NM_189945.1
DB_XREF= gi:34906973
GEN=P0004D12.28
TID=OsAffx.23976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0004D12.28 (P0004D12.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6880011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23976.1.S1_at--639--4131Chr01:40285779..40285803 (25 bp)
CGCTGCATCTGGAGCAAGCAGAGGA
LOC_Os01g68800
OsAffx.23976.1.S1_at--1138--6171Chr01:40285838..40285862 (25 bp)
GAGGAGCCGGTTTTTGTTCTGACCG
LOC_Os01g68800
OsAffx.23976.1.S1_at--960--5851Chr01:40285841..40285865 (25 bp)
GAGCCGGTTTTTGTTCTGACCGACG
LOC_Os01g68800
OsAffx.23976.1.S1_at--305--4491Chr01:40285843..40285867 (25 bp)
GCCGGTTTTTGTTCTGACCGACGAG
LOC_Os01g68800
OsAffx.23976.1.S1_at--665--6791Chr01:40285847..40285871 (25 bp)
GTTTTTGTTCTGACCGACGAGTGGG
LOC_Os01g68800
OsAffx.23976.1.S1_at--1012--10351Chr01:40285848..40285872 (25 bp)
TTTTTGTTCTGACCGACGAGTGGGC
LOC_Os01g68800
OsAffx.23976.1.S1_at--465--8211Chr01:40285873..40285897 (25 bp)
GGAATTCTTCGCCAAATCCGACGCA
LOC_Os01g68800
OsAffx.23976.1.S1_at--448--3151Chr01:40285875..40285899 (25 bp)
AATTCTTCGCCAAATCCGACGCAAA
LOC_Os01g68800
OsAffx.23976.1.S1_at--111--10351Chr01:40285877..40285901 (25 bp)
TTCTTCGCCAAATCCGACGCAAAGA
LOC_Os01g68800
OsAffx.23976.1.S1_at--856--3291Chr01:40285885..40285909 (25 bp)
CAAATCCGACGCAAAGAGGAGACTC
LOC_Os01g68800
OsAffx.23976.1.S1_at--941--2331Chr01:40285897..40286121 (25 bp)
AAAGAGGAGACTCGCTAAACAGCAG
LOC_Os01g68800
Target Sequence 
CGCTGCATCTGGAGCAAGCAGAGGAGGTGATTTTGGTCGGGGAGGAGGAGGAGGAAGAGGAGGAGCCGGTTTTTGTTCTG
ACCGACGAGTGGGCGGAATTCTTCGCCAAATCCGACGCAAAGAGGAGACTCGCTAAACAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis