Browse Element(s) Details


Os.56048.1.S1_s_at

Description gb:AK109173.1
DB_XREF= gi:32994382
TID=Os.56048.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-155-H08, full insert sequence.
FL= gb:AK109173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6874011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56048.1.S1_s_at--1111--5491Chr01:40253586..40253610 (25 bp)
GAACAGCAGCGGTAGATCCTTCAGC
LOC_Os01g68740
Os.56048.1.S1_s_at--614--1631Chr01:40253579..40253603 (25 bp)
AGCGGTAGATCCTTCAGCGGCAGCA
LOC_Os01g68740
Os.56048.1.S1_s_at--920--10511Chr01:40253567..40253591 (25 bp)
TTCAGCGGCAGCAGCTACTCCAATT
LOC_Os01g68740
Os.56048.1.S1_s_at--762--9211Chr01:40253540..40253564 (25 bp)
TCCACTGACACCTACGGATCAGGAG
LOC_Os01g68740
Os.56048.1.S1_s_at--1121--1511Chr01:40253494..40253518 (25 bp)
AGCAGCAGTATGAAGCGGCCGCCGC
LOC_Os01g68740
Os.56048.1.S1_s_at--315--9331Chr01:40253429..40253453 (25 bp)
TCGCGCCTGAAGAAGACCAGCGGCA
LOC_Os01g68740
Os.56048.1.S1_s_at--552--2771Chr01:40253417..40253441 (25 bp)
AAGACCAGCGGCAGGAACGACGACG
LOC_Os01g68740
Os.56048.1.S1_s_at--535--2611Chr01:40253327..40253351 (25 bp)
AACGCCGGCGCTAACTACGGTGGTG
LOC_Os01g68740
Os.56048.1.S1_s_at--236--7191Chr01:40253240..40253264 (25 bp)
GTCGGTACTCCGTACTACGGCGGTG
LOC_Os01g68740
Os.56048.1.S1_s_at--384--8531Chr01:40253144..40253168 (25 bp)
TGGACTCCCCAGAACGGCGCGAGGT
LOC_Os01g68740
Os.56048.1.S1_s_at--957--4731Chr01:40253115..40253139 (25 bp)
GCTGTACATCAACACTCGCGAGGTC
LOC_Os01g68740
Target Sequence 
GAACAGCAGCGGTAGATCCTTCAGCGGCAGCAGCTACTCCAATTCCTCCACTGACACCTACGGATCAGGAGGACGGCAGC
AGCAGCAGCAGCAGCAGCAGTATGAAGCGGCCGCCGCCGGCGACAAGACGTCGGCGAAGCGCCAGCCGCCGCCGCCGTCG
CGCCTGAAGAAGACCAGCGGCAGGAACGACGACGCCGCCACCGCCGCCGTCGTCGGCTACGCAGCATCCGGCGGCGGCTA
CGGCGGCAGCACCAAGGCCAACGCCGGCGCTAACTACGGTGGTGGTGGTGGTTACGGTTACAACGGCGGCTACAACGCCG
GCAGCGTCACCCTCTACGGCGCCGGCGTCGGTACTCCGTACTACGGCGGTGGCGGCGGCGGAGGTTACACCGGTGGTGGA
TCCGTGCCGTACGGCGGCGGCGGCGGCGTGCCGGCCGGGTACTGGACTCCCCAGAACGGCGCGAGGTCGCCGCTGTACAT
CAACACTCGCGAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56048.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis