Browse Element(s) Details


Os.26886.3.S1_x_at

Description gb:NM_194729.1
DB_XREF= gi:37530817
TID=Os.26886.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26886 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retrotransposable elements TNP2 (OSJNAb0072F04.20), mRNA.
PROD=putative retrotransposable elements TNP2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0415011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g303708/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g253908/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g266307/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g013907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g271407/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g139207/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g377507/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g191907/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g025006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g239906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g270106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g040106/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g344506/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g073606/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g351206/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os05g351006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g185306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g200806/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g290006/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g128806/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g205906/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g257306/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g406105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g276705/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g512905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g284205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g269005/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g255505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g098805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g133205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g210305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g172305/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g455105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g212805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g322805/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g249205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g231905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g330105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g084905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g260905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g131505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g342905/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g027505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g230105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g423505/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g076105/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g294205/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g221605/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g241004/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g069804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g342004/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g261804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g384304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g229004/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g240204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g409204/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g110804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g238304/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g282604/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g314004/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g229804/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g144603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g104703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g257603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g141403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g179703/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g325303/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g326603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g577993/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g163803/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g279903/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g315622/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g191902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g317002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g349202/11hypothetical protein
LOC_Os05g329502/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g470802/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g355202/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g152902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g161401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g117801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g378601/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g394201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g203901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g353701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g097121/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g117801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g141801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g116601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g263201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g274201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g192401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g293401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g187401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g153201/11hypothetical protein
LOC_Os09g166301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g321901/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g264701/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04120OsAffx.20767.1.S1_at11/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04120Os.33624.1.S1_at1/1110+1888519..1893464NB-ARC domain containing protein
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein
LOC_Os10g04180Os.18720.1.S1_at10/1110+1933447..1936961NB-ARC domain containing protein, expressed
LOC_Os10g04190Os.46733.1.S1_at11/1110+1938793..1939827disease resistance protein RPM1 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26886.3.S1_x_at--769--87364Chr11:19010865..19010889 (25 bp)
TGTCAGTTACCTTGGACCTAATGAA
LOC_Os11g33010
Os.26886.3.S1_x_at--905--52953Chr11:19010947..19010971 (25 bp)
GAAGGCTATGCTTCCTGTTGAGAAC
LOC_Os11g33010
Os.26886.3.S1_x_at--866--42547Chr11:19010960..19010984 (25 bp)
CCTGTTGAGAACACATTGCCCGAGA
LOC_Os11g33010
Os.26886.3.S1_x_at--774--92731Chr11:10940566..10940590 (25 bp)
TCCGTAGAATTCACGCTTGTCCCAA
LOC_Os11g19190
Os.26886.3.S1_x_at--1145--3612Chr12:15815957..15815977 (21 bp)
CTTGTCCCAACAACTGCATATGCAT
LOC_Os12g27010
Os.26886.3.S1_x_at--550--81357Chr11:19011085..19011109 (25 bp)
GGACTTGGATGCTTGTCCTGTCTGC
LOC_Os11g33010
Os.26886.3.S1_x_at--1144--8711Chr10:1914319..1914343 (25 bp)
TGTCTGCAATGCTTCTCGATACAAG
LOC_Os10g04150
Os.26886.3.S1_x_at--714--72560Chr11:20322590..20322614 (25 bp)
GTCCGGCAAAGGTTGTGTGGTATCT
LOC_Os11g35520
Os.26886.3.S1_x_at--242--28332Chr12:21473003..21473230 (25 bp)
AAGTTAGTACGTTGGCACGCCATGG
LOC_Os12g35370
Os.26886.3.S1_x_at--419--85953Chr11:19011283..19011307 (25 bp)
TGGTATGCTTAGACACCCAGCGGAT
LOC_Os11g33010
Os.26886.3.S1_x_at--46--1737Chr04:14334451..14334472 (22 bp)
ACTTTGCTGCCGACCCTAGAAACGT
LOC_Os04g24920
Target Sequence 
TGTCAGTTACCTTGGACCTAATGAAGCTNAAGGCAAGTAGTGGATGGACAGACAAGAGTTTCACAGATCTTTTAGGAATT
TTGAAGGCTATGCTTCCTGTTGAGAACACATTGCCCGAGANGACATACGNAGCAAAGNAGGTTCTGTGTCCACTGGGGTT
AGAGGTCCGTAGAATTCACGCTTGTCCCAACAACTGCATATGCATATTGTACCACAAGCAATATGCGGACTTGGATGCTT
GTCCTGTCTGCAATGCTTCTCGATACAAGCGAAAGAAAAGTGCTCACAAAGGAAATAAGTCAAAGAGGGGTGGTCCGGCA
AAGGTTGTGTGGTATCTACCTATCATTGATCGTTTCAAGAGAATCTTTGCCAACCCGAACGAAGCGAAGTTAGTACGTTG
GCACGCCATGGAAAGAAGGAATGATGGTATGCTTAGACACCCAGCGGATTCGATTGAATGGAGGAATATAGATCGAAAAC
ACAAAGACTTTGCTGCCGACCCTAGAAACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26886.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis