Browse Element(s) Details


Os.26894.1.A1_x_at

Description gb:CB634333
DB_XREF= gi:29629322
DB_XREF=OSIIEb13M12.r
CLONE=OSIIEb13M12
TID=Os.26894.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.26894 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:S71195 (A.thaliana) S71195 myosin heavy chain homolog - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g277008/11expressed protein
LOC_Os12g244502/11retrotransposon protein, putative, unclassified, expressed
LOC_Os02g272101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27650NANA8+16716705..16720051transposon protein, putative, unclassified
LOC_Os08g27660OsAffx.22023.1.S1_x_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27660OsAffx.22023.1.S1_at11/118+16729654..16730043hypothetical protein
LOC_Os08g27674OsAffx.17193.2.S1_s_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.1.S1_x_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.1225.1.S1_at11/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.17193.2.S1_x_at10/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8371.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27674OsAffx.8372.1.S1_at1/118+16730551..16736719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27690OsAffx.22022.1.S1_at2/118+16739537..16739791hypothetical protein
LOC_Os08g27700OsAffx.17195.1.S1_at11/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_at9/118+16740754..16743564expressed protein
LOC_Os08g27700Os.26894.1.A1_x_at8/118+16740754..16743564expressed protein
LOC_Os08g27710OsAffx.29383.1.S1_x_at1/118+16749942..16750418hypothetical protein
LOC_Os08g27720Os.12420.1.S1_at10/118+16759520..16763514Pirin, putative, expressed
LOC_Os08g27730OsAffx.22021.1.S1_at11/118+16767310..16771221retrotransposon protein, putative, unclassified
LOC_Os08g27730OsAffx.9516.1.S1_at3/118+16767310..16771221retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26894.1.A1_x_at--921--6652Chr12:13953536..13953560 (25 bp)
GTTGCATGTCGCAAACTCGAGACGA
LOC_Os12g24450
Os.26894.1.A1_x_at--206--5794Chr12:13953556..13953580 (25 bp)
GACGACGGTGATGCAACTCTTTGCA
LOC_Os12g24450
Os.26894.1.A1_x_at--131--795Chr12:13953617..13953641 (25 bp)
ATGTGTACTCTTTATCTTGGTTTGC
NONE
Os.26894.1.A1_x_at--1047--7437Chr12:13953619..13953643 (25 bp)
GTGTACTCTTTATCTTGGTTTGCTT
NONE
Os.26894.1.A1_x_at--537--7015Chr12:13953621..13953645 (25 bp)
GTACTCTTTATCTTGGTTTGCTTTT
NONE
Os.26894.1.A1_x_at--916--9894Chr12:13953622..13953646 (25 bp)
TACTCTTTATCTTGGTTTGCTTTTT
NONE
Os.26894.1.A1_x_at--808--10712Chr08:16742604..16742628 (25 bp)
TTGCTTTTTATTTTGTTGAGTGTGT
LOC_Os08g27700
Os.26894.1.A1_x_at--47--6133Chr02:16003467..16003900 (25 bp)
GAGTGTGTTTGATTACATTTAAACT
NONE
Os.26894.1.A1_x_at--914--6551NONE
GATTACATTTAAACTACACTCTTTG
NONE
Os.26894.1.A1_x_at--503--175Chr12:13953676..13953695 (20 bp)
ATTTAAACTACACTCTTTGTATGAG
NONE
Os.26894.1.A1_x_at--64--3775Chr12:13953683..13953707 (25 bp)
CTCTTTGTATGAGTGATACTTTGTA
NONE
Target Sequence 
GTTGCATGTCGCAAACTCGAGACGACGGTGATGCAACTCTTTGCAAACTATGGATGGAGATTCACAAATAGACTTGAATA
AATGTGTACTCTTTATCTTGGTTTGCTTTTTATTTTGTTGAGTGTGTTTGATTACATTTAAACTACACTCTTTGTATGAG
TGATACTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26894.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis