Browse Element(s) Details


Os.26965.1.S1_at

Description gb:AK105709.1
DB_XREF= gi:32990918
TID=Os.26965.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.1 (B1088C09.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E07, full insert sequence.
FL= gb:AK072789.1 gb:AK105709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6112011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61100OsAffx.23878.1.S1_at11/111+35689280..35695661transposon protein, putative, unclassified
LOC_Os01g61110OsAffx.23879.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61110Os.28778.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass
LOC_Os01g61140OsAffx.21477.2.S1_at1/111+35721084..35722483retrotransposon protein, putative, unclassified
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed
LOC_Os01g61170Os.55669.1.S1_at1/111+35734779..35735447prenylated rab acceptor, putative
LOC_Os01g61180Os.27852.1.S1_at11/111+35736139..35738548Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.2.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61190Os.14101.1.S1_at11/111+35739779..35744313Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g61200Os.14101.3.S1_at11/111+35742555..35744023GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26965.1.S1_at--841--9451Chr01:35714877..35714901 (25 bp)
TCTGGTGGAGCATCGCCTAGGAGAA
LOC_Os01g61120
Os.26965.1.S1_at--752--6231Chr01:35714847..35714871 (25 bp)
GATGGCTTACTATAACCAGCCGCTT
LOC_Os01g61120
Os.26965.1.S1_at--929--1651Chr01:35714830..35714854 (25 bp)
AGCCGCTTCTTGCTAACTTGTTGTC
LOC_Os01g61120
Os.26965.1.S1_at--350--2971Chr01:35714061..35714085 (25 bp)
AATGGATTGATCTTGCACGGGCTAC
LOC_Os01g61120
Os.26965.1.S1_at--338--5571Chr01:35714018..35714042 (25 bp)
GAAAGAGCTGCCATCTCCAGAGATT
LOC_Os01g61120
Os.26965.1.S1_at--23--1271Chr01:35713998..35714022 (25 bp)
AGATTTCAAACCTACCTGACATGCC
LOC_Os01g61120
Os.26965.1.S1_at--995--3191Chr01:35713892..35713916 (25 bp)
CAATGACTCCTTGGCCTGTTTGATT
LOC_Os01g61120
Os.26965.1.S1_at--401--5611Chr01:35713849..35713873 (25 bp)
GACAACTTTTGTTTTGATCACCCGA
LOC_Os01g61120
Os.26965.1.S1_at--405--1591Chr01:35713778..35713802 (25 bp)
AGCTCGTCGATATTTTTGTTTCCCA
LOC_Os01g61120
Os.26965.1.S1_at--909--8771Chr01:35713762..35713786 (25 bp)
TGTTTCCCAATCTTTATGGCCAGGC
LOC_Os01g61120
Os.26965.1.S1_at--523--10091Chr01:35713748..35713772 (25 bp)
TATGGCCAGGCCAATTTTAACCCTT
LOC_Os01g61120
Target Sequence 
TCTGGTGGAGCATCGCCTAGGAGAATATCTGATGGCTTACTATAACCAGCCGCTTCTTGCTAACTTGTTGTCCTTTGTTT
CACGGACAATTAATTCATACTGGGGAACACAGCAATGGATTGATCTTGCACGGGCTACAGGCCTGCAAACTAGTAAGAAA
GAGCTGCCATCTCCAGAGATTTCAAACCTACCTGACATGCCACTGTTAGAATGTGGCACAACAGAAGTACAAAATATGGA
TGATAGCAACAAGCAACAGCCAATGAAGTAACCGTACATAGCCAATGACTCCTTGGCCTGTTTGATTGTGGCCATTCAAC
ACAGGGACAACTTTTGTTTTGATCACCCGATACTGTACAGGTATATATACGGGAAAGACTTCGTACGGCAGATTGAAGCT
CGTCGATATTTTTGTTTCCCAATCTTTATGGCCAGGCCAATTTTAACCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis